Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30614
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    30   0.38 
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s...    28   1.2  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    27   3.5  
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    26   6.2  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   6.2  

>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -2

Query: 564 FEGSGCGFGTGSVMGLVQQIS---TLSWQSSSPNLTSSTPHPVTLALLTST-PSLF 409
           F  SG    T  ++  + Q+S   T SW SSS  LT +    VT A+ T+  P +F
Sbjct: 151 FGASGITSNTDPIVDEIDQMSARFTFSWDSSSMQLTLTEGMAVTTAVYTNAIPQIF 206


>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
           subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +3

Query: 54  KISLFYVIKQKKVMMC*LVHSFRNTVT*NFVGSLSQSVLIKEAQCVRFC 200
           ++S F   +Q+KV +   +H F +T     +G++   +   E QC++ C
Sbjct: 19  ELSKFIESEQQKVKLQQAIHQFTSTCWPKCIGNIGNKLDKSEEQCLQNC 67


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
 Frame = -2

Query: 381 LQDSPFLSVNT-----LLLSVGLTMMSSRXXXXXXXXXXXXPKMFRSKAGSKVVSWARPT 217
           LQ  P LS NT     L+  + L   +SR                 +K  +++VS +   
Sbjct: 207 LQALPSLSKNTVNESSLVRKLNLEKSTSRELRIPTQTLEPKFTTNTAKYANELVSCSMLD 266

Query: 216 VTSTASKSERIALLLLKHSEKENQQNFTSLYYENYALISTSSLF 85
            +ST SKS    + L  H    + QN +     +   +  SSLF
Sbjct: 267 SSSTLSKSVNSKINLKSHQSSSSVQNSSRKLTSSQLTLRQSSLF 310


>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 655 GELAELSLRTHPSGDGHSDPHGVPVAASLQLRGVRLRL 542
           G+L+ + +R    G    DPH VPV  S +   V +RL
Sbjct: 131 GKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSVTVRL 168


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 518 NPITEPVPKPQPDPSKLKGCG 580
           NPI  PVP+P+ D ++ K CG
Sbjct: 579 NPI--PVPRPRVDLTQCKSCG 597


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,373
Number of Sequences: 5004
Number of extensions: 53976
Number of successful extensions: 266
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)