Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30614
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   2.9  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    23   2.9  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   2.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.8  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 165 HSEKENQQNFTSLYYENYALISTSSLFF 82
           H E + +QN  SL  EN+ +   + + F
Sbjct: 34  HQEMQGKQNSASLNSENFGIFKRALMGF 61


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 165 HSEKENQQNFTSLYYENYALISTSSLFF 82
           H E + +QN  SL  EN+ +   + + F
Sbjct: 34  HQEMQGKQNSASLNSENFGIFKRALMGF 61


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 165 HSEKENQQNFTSLYYENYALISTSSLFF 82
           H E + +QN  SL  EN+ +   + + F
Sbjct: 34  HQEMQGKQNSASLNSENFGIFKRALMGF 61


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 63  RIFFWVFLMRCFVCT 19
           RIF W+F + C + T
Sbjct: 548 RIFLWIFTVACVLGT 562


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 519 LVQQISTLSWQSSSPNLTSSTPH 451
           +V + S  S +S SP+L +S PH
Sbjct: 32  IVDRRSPSSSRSPSPSLLTSQPH 54


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 63  RIFFWVFLMRC 31
           R+F WVF + C
Sbjct: 483 RLFLWVFTLAC 493


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 229 PGHDLRPCLASEHLRNAPHAGEARHGEPG 315
           P   L+P LAS H   +   G +    PG
Sbjct: 275 PNSSLQPSLASHHSHLSSALGRSACHSPG 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,121
Number of Sequences: 438
Number of extensions: 3849
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)