Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30611
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    30   0.35 
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    25   7.5  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    25   7.5  

>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -1

Query: 591 SLCAILTFPIPEPTYNTQQTLIATPYFDGYLPLICITSASKI*G 460
           SL A   FPI +PT N Q  L  T YF   L L+C +    + G
Sbjct: 147 SLVASKFFPIDDPTLNKQVPLCETDYF-RRLDLLCASCGMALRG 189


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 506 PSK*GVAISVCCVLYVGSGIGNVN 577
           P   G   S+CC+L++G  +  ++
Sbjct: 95  PQLAGTVFSICCLLFLGDNLSRID 118


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -3

Query: 568 SDTRTNIQHTTNAYRYTLLRRLSTS-NLY--H*CKQNLRYSVR*SNC*YLY 425
           +DTR     T+N YR+T +   STS N +  H   +N+RY     +  + Y
Sbjct: 534 TDTRHYWNLTSNIYRWTPVSTNSTSKNSFNGHTINENMRYDAHMDSIEFFY 584


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,650
Number of Sequences: 5004
Number of extensions: 46021
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)