Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30610
         (766 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5G504 Cluster: Sensor protein; n=2; Geobacter|Rep: Sen...    34   4.4  
UniRef50_Q7MB73 Cluster: Similarities with unknown protein. Prob...    33   7.8  

>UniRef50_A5G504 Cluster: Sensor protein; n=2; Geobacter|Rep: Sensor
           protein - Geobacter uraniumreducens Rf4
          Length = 438

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 15/54 (27%), Positives = 32/54 (59%)
 Frame = -2

Query: 240 TKYNSAPDFIYVPVFLIIFVLSSNELIALWTAWPFIKLISRTDHYKFIYKLFLN 79
           T + +AP +I+V + L IF++ S +++ L  A+P + + ++      I  +FL+
Sbjct: 14  TTWKTAPTWIFVEIMLAIFIVESLDMVLLHYAFPSLSIFAKVVLDGLILLVFLS 67


>UniRef50_Q7MB73 Cluster: Similarities with unknown protein.
           Probable membrane protein; n=1; Photorhabdus luminescens
           subsp. laumondii|Rep: Similarities with unknown protein.
           Probable membrane protein - Photorhabdus luminescens
           subsp. laumondii
          Length = 154

 Score = 33.1 bits (72), Expect = 7.8
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = -2

Query: 198 FLIIFVLSSNELIALWTAWPFIKLISRTDHYKFIYKLFLNLMYI*YIFI 52
           F  IF LS   ++ +  + PF+ +++   HY F  KLFLN +   YI++
Sbjct: 98  FYKIFTLSIITILLILVSIPFLYILNHI-HYDFSLKLFLNTIISSYIYL 145


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 658,514,603
Number of Sequences: 1657284
Number of extensions: 12272171
Number of successful extensions: 24925
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24921
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63792713725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)