Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30610
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.9  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    26   6.8  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    25   9.0  

>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 150

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +3

Query: 321 MQPIKKIYALN----CNINLVKHWSFCVILIPLSNHILLYNKPY 440
           ++ IKKIY ++    C+I L++ W   + L+P+   +  Y  PY
Sbjct: 27  LEEIKKIYKISYWWLCSIALIQTWWVLLGLLPIFFALEHYEVPY 70


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 628 YSCFYGCSVINTEPRIRLT*NFVSM*KI 545
           + CFY  S+IN EP + L     S  K+
Sbjct: 218 HMCFYPLSIINDEPNLALMYRLKSFAKV 245


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 740 VRVFFDWCPNIGVVLEVNV*MKTSS 666
           +RV+F+WC N  +VL     +K SS
Sbjct: 605 MRVWFEWCANAYLVLRNGSQIKLSS 629


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,154
Number of Sequences: 5004
Number of extensions: 57514
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)