Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30610
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38248| Best HMM Match : 7tm_1 (HMM E-Value=1e-06)                   29   4.1  
SB_41907| Best HMM Match : Reprolysin (HMM E-Value=9.2e-05)            29   5.4  
SB_25711| Best HMM Match : Oxidored_q1_N (HMM E-Value=3)               29   5.4  
SB_42679| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-08)                 28   9.5  
SB_17889| Best HMM Match : Patched (HMM E-Value=0.14)                  28   9.5  

>SB_38248| Best HMM Match : 7tm_1 (HMM E-Value=1e-06)
          Length = 374

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = -2

Query: 621 AFTDVPL*ILNHASD*LETLYPCRKYMYLMVRLIFILVLDSLIIMTINNNVNFKCPSKRA 442
           +   +PL + +   D L+T + CR   YL    IFI  +++LI++ +   +    PSK  
Sbjct: 145 SLVSIPLMVSSLLVDYLKTDWACRAQRYLESAFIFI-TINNLIVIGVERYLVIYKPSKVP 203

Query: 441 ST 436
           +T
Sbjct: 204 TT 205


>SB_41907| Best HMM Match : Reprolysin (HMM E-Value=9.2e-05)
          Length = 656

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 467 LTLLFIVIIIRESNTNINISLTIKYM---YFLHGYKVSSQSDA 586
           +T+LFIVIII   + NINI++ I  +   + L    VSS   A
Sbjct: 405 ITILFIVIIIIIKDNNININIIIDIIINTFILINSSVSSSKTA 447


>SB_25711| Best HMM Match : Oxidored_q1_N (HMM E-Value=3)
          Length = 166

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 467 LTLLFIVIIIRESNTNINISLTIKYM---YFLHGYKVSSQSDA 586
           +T+LFIVIII   + NINI++ I  +   + L    VSS   A
Sbjct: 91  ITILFIVIIIIIKDNNININIIIDIIINTFILINSSVSSSKTA 133


>SB_42679| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-08)
          Length = 537

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 270 DTLVTRHVTGTKYNSAPDFIYVP-VFLIIFVLSSNELIAL 154
           D L  + +TG    S PD +      L+  +LS+NE+IA+
Sbjct: 23  DILAAKDLTGASLTSVPDKVLRNYTNLVTLILSNNEIIAI 62


>SB_17889| Best HMM Match : Patched (HMM E-Value=0.14)
          Length = 925

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = -2

Query: 198 FLIIFVLSSNELIALWTAWPFIKLISRTDHYKFIYKLFLNLMYI*YIFI*AKFLV 34
           F+ +F+L   + I + T+W    ++S      F+Y++ L+  YI    + + F++
Sbjct: 272 FIFLFMLFQTQSIWI-TSWAVFSILSCFFGANFVYRMILDCRYIGIFHVLSVFII 325


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,334,760
Number of Sequences: 59808
Number of extensions: 375788
Number of successful extensions: 777
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)