Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30610
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.5  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   9.5  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   9.5  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   9.5  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   9.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.5  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +3

Query: 375 HWSFCVILIPLSNHILL 425
           +W  C++L+ ++N I+L
Sbjct: 90  YWDLCMLLLLVANLIIL 106


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +3

Query: 375 HWSFCVILIPLSNHILL 425
           +W  C++L+ ++N I+L
Sbjct: 90  YWDLCMLLLLVANLIIL 106


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 510 VLDSLIIMTINNNVNFK 460
           ++ SL+  TI+NN N+K
Sbjct: 303 IISSLLNNTIHNNNNYK 319


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 510 VLDSLIIMTINNNVNFK 460
           ++ SL+  TI+NN N+K
Sbjct: 314 IISSLLNNTIHNNNNYK 330


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 510 VLDSLIIMTINNNVNFK 460
           ++ SL+  TI+NN N+K
Sbjct: 314 IISSLLNNTIHNNNNYK 330


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 510 VLDSLIIMTINNNVNFK 460
           ++ SL+  TI+NN N+K
Sbjct: 303 IISSLLNNTIHNNNNYK 319


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +3

Query: 375 HWSFCVILIPLSNHILL 425
           +W  C++L+ ++N I+L
Sbjct: 90  YWDLCMLLLLVANLIIL 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,925
Number of Sequences: 438
Number of extensions: 4144
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)