Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30610
         (766 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31960.1 68415.m03905 glycosyl transferase family 48 protein ...    30   1.5  
At5g19520.1 68418.m02325 mechanosensitive ion channel domain-con...    29   2.6  
At5g16700.1 68418.m01955 glycosyl hydrolase family 5 protein / c...    28   7.8  

>At2g31960.1 68415.m03905 glycosyl transferase family 48 protein
           contains Pfam profile: PF02364 1,3-beta-glucan synthase;
           contains non-consensus splice aite AC at exon 33
          Length = 1959

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -2

Query: 243 GTKYNSAPDFIYVPVFLIIFVLSSNELIALWTAWPFIKLISRTDHYKFI 97
           G   NS+P F    + +I+  LS N L  L  A+PFI+       YK +
Sbjct: 590 GGHQNSSPSFF---IIVILIYLSPNMLSTLLFAFPFIRRYLERSDYKIV 635


>At5g19520.1 68418.m02325 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 742

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 479 FIVIIIRESNTNINISLTIKYMYFLHGYKVSSQSDAWFSI 598
           F+V II +     N  L  K +YF+HG K + Q   WFS+
Sbjct: 236 FVVFIIEK-----NYLLRKKVLYFVHGLKKNVQVFIWFSL 270


>At5g16700.1 68418.m01955 glycosyl hydrolase family 5 protein /
           cellulase family protein cellulase (EC 3.2.1.4)
           precursor - Xanthomonas campestris pv. campestris,
           PIR:JH0158
          Length = 488

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 512 NINISLTIKYMYFLHGYKVSSQSDAW 589
           ++N+S T K ++ LH Y  S   D+W
Sbjct: 252 SVNVSFTDKLVFELHWYSFSDGRDSW 277


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,979,270
Number of Sequences: 28952
Number of extensions: 259648
Number of successful extensions: 492
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)