Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30606
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 52 1e-07
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 46 5e-06
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 36 0.004
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 32 0.071
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 31 0.22
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||... 27 2.0
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 27 2.7
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 26 4.7
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 26 4.7
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc... 26 6.1
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po... 25 8.1
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 51.6 bits (118), Expect = 1e-07
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +3
Query: 492 SRCWLRGRAWHKECFKCGDCMKRLD--STNCCEGSDKDIYCKVC 617
S+ W G+ WH +CFKC +C K+LD S + + K I+CK+C
Sbjct: 35 SQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLC 78
Score = 46.0 bits (104), Expect = 5e-06
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +2
Query: 137 CPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTN---CSEHEGELYCKVC 292
C KC +SV + + GG WH CFKC C K LD ++ + + +++CK+C
Sbjct: 24 CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLC 78
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 46.0 bits (104), Expect = 5e-06
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +2
Query: 101 STMP--FKPADNPKCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGE 274
ST P ++ C CG S+ A A G K H CFKC C + L+ EG+
Sbjct: 244 STKPVLYRGNSEKSCHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGK 303
Query: 275 LYCKVCHARKF 307
YC + + +F
Sbjct: 304 FYCHLDYHEQF 314
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +2
Query: 134 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHA 298
KC KC K + + + G ++H C+ CG C LL E C+ C A
Sbjct: 377 KCKKCRKPILGISVKGSDG-EYHSQCWTCGACNALLGDEGYFMIENTPICRPCKA 430
Score = 26.6 bits (56), Expect = 3.5
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 510 GRAWHKECFKCGDCMKRLD 566
G+ H +CFKC C + L+
Sbjct: 275 GKKLHPQCFKCDTCSQNLE 293
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 36.3 bits (80), Expect = 0.004
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +2
Query: 137 CPKCGKSVYAAEERVA-GGLKWHKMCFKCGLCQKLLDSTN---CSEHEGELYCKVC 292
C +CG++ E ++ GG WHK CF C C K L+ ++ +G C C
Sbjct: 19 CFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVCSSC 74
Score = 35.5 bits (78), Expect = 0.008
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 516 AWHKECFKCGDCMKRLDSTNCCEGSDKDIYCKVC 617
++H+ECF+C DC K++ +N + ++ I+C C
Sbjct: 96 SYHRECFRCHDCRKQIIDSN-FKRDNRTIFCNDC 128
Score = 32.7 bits (71), Expect = 0.054
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Frame = +2
Query: 131 PKCPKCGKSVYAAEERV------AGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVC 292
P C C + A R+ +G +H+ CF+C C+K + +N ++C C
Sbjct: 69 PVCSSCAHTCTACRMRIKDYALMSGYDSYHRECFRCHDCRKQIIDSNFKRDNRTIFCNDC 128
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 510 GRAWHKECFKCGDCMKRLDSTN--CCEGSDKDIYCKVC 617
G WHK+CF C C K L+ ++ + SD C C
Sbjct: 37 GHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVCSSC 74
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 32.3 bits (70), Expect = 0.071
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +2
Query: 137 CPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSE--HEGELYCKVCH 295
C CG A ++ ++ W K C CGL + + CSE G C+ CH
Sbjct: 107 CTTCG----AIDDHISVRCPWTKKCMNCGLLGHI--AARCSEPRKRGPRVCRTCH 155
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 30.7 bits (66), Expect = 0.22
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +2
Query: 104 TMPFKPADNPKCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYC 283
T+P P+C CG++ + A E G + C+ C Q ++ C+E + E C
Sbjct: 8 TVPQTTRPGPRCYNCGENGHQARECTKGSI-----CYNCN--QTGHKASECTEPQQEKTC 60
Query: 284 KVC 292
C
Sbjct: 61 YAC 63
>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 194 KWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCH 295
K+H C CG C+ +S E+ ++CK C+
Sbjct: 65 KFHIPCVICGACK---NSLTVEEYRSTVHCKYCN 95
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 27.1 bits (57), Expect = 2.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 510 GRAWHKECFKCGDC 551
G +H ECF+C DC
Sbjct: 132 GNIYHLECFRCHDC 145
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 246 ESSNFWHRPHLKHILCHLRPP 184
E+SN++ P L+H LCH PP
Sbjct: 241 EASNYYVAP-LEHPLCHSAPP 260
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -2
Query: 520 HARPRSQHLLCSVHIATAARTALA--GRS-FSDRAGLQTSSVRPHTPRILALQVVAGVHR 350
+ P S+ LLCS H+ + ++ ++ G S FS +G T+ + + ++ VHR
Sbjct: 116 YGSPLSESLLCSAHVFSICKSPISQVGDSGFSSGSGRNTTDIVLFPFVLAVIKCCDIVHR 175
Query: 349 E 347
E
Sbjct: 176 E 176
>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 475
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 705 LITIGVRVTLQHTSAFSGNHI 643
L+T G+ ++LQH +SG H+
Sbjct: 213 LLTKGITLSLQHQDLWSGEHL 233
>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Frame = +2
Query: 344 CLSMDTG----DHLK--GENAGGVRTNGACLEPRSI 433
C SMD G D LK GEN + +G C P+SI
Sbjct: 258 CTSMDRGKMSDDFLKLDGENGNQLFISGDCYRPQSI 293
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,516
Number of Sequences: 5004
Number of extensions: 54271
Number of successful extensions: 166
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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