Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30606
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   1.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.0  

>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +3

Query: 162 TPLRSAWLVASNGTKCASNVVCAKNCWTQPTAQSTRVNCTAK 287
           +PL+      +  T   + +V   NC   P   +T   CTA+
Sbjct: 391 SPLKREGGPPTGATTGPNEIVTCTNCGPNPCTHTTTNGCTAE 432


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 41  CTRVRELDSRSDSTNRIS*ASTMPFKPADN 130
           C R R+LDS SDS   I   +  P KPA +
Sbjct: 568 CPRFRKLDSPSDS--GIESGTEKPDKPASS 595



 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +2

Query: 368 HLKGENAGGVRTNGACLEPRSIAKAPPGEGCPR 466
           H +  N+G   +    L   S++K P    CPR
Sbjct: 538 HRRRANSGSTSSGDDELHRASLSKTPQPPQCPR 570


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 484 VHIATAARTALAGRSFSDRAGLQTS 410
           VH  T++ +A  G   +DR G ++S
Sbjct: 411 VHHTTSSSSAAGGEGLADRRGSESS 435


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +3

Query: 192 SNGTKCASNVVCAKNCWTQPTAQSTRVNCTAK 287
           +  T   + +V   NC   P   +T   CTA+
Sbjct: 415 TGATTGPNEIVTCTNCGPNPCTHTTTNGCTAE 446


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +3

Query: 192 SNGTKCASNVVCAKNCWTQPTAQSTRVNCTAK 287
           +  T   + +V   NC   P   +T   CTA+
Sbjct: 435 TGATTGPNEIVTCTNCGPNPCTHTTTNGCTAE 466


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +3

Query: 192 SNGTKCASNVVCAKNCWTQPTAQSTRVNCTAK 287
           +  T   + +V   NC   P   +T   CTA+
Sbjct: 384 TGATTGPNEIVTCTNCGPNPCTHTTTNGCTAE 415


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 300  RAWHTLQYSSPSCSEQLVESSN 235
            R W  L+Y+ PS  +  +ES +
Sbjct: 1195 RFWERLRYAIPSAGDISIESKS 1216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,144
Number of Sequences: 438
Number of extensions: 4155
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)