Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30606
(713 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55770.1 68416.m06197 LIM domain-containing protein similar t... 56 2e-08
At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 56 3e-08
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 52 5e-07
At3g61230.1 68416.m06852 LIM domain-containing protein similar t... 51 9e-07
At1g10200.1 68414.m01150 transcription factor LIM, putative stro... 51 9e-07
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 49 4e-06
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 33 0.19
At5g66610.1 68418.m08396 LIM domain-containing protein contains ... 32 0.33
At1g16680.1 68414.m01997 DNAJ heat shock N-terminal domain-conta... 31 1.0
At1g04120.1 68414.m00401 ABC transporter family protein Strong s... 31 1.0
At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger) fa... 30 1.3
At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger) fa... 30 1.3
At5g66630.1 68418.m08398 LIM domain-containing protein contains ... 30 1.8
At4g14740.2 68417.m02267 expressed protein 29 2.3
At4g14740.1 68417.m02266 expressed protein 29 2.3
At4g36860.1 68417.m05226 LIM domain-containing protein low simil... 29 4.0
At4g30790.1 68417.m04362 expressed protein 29 4.0
At5g66620.1 68418.m08397 LIM domain-containing protein contains ... 28 5.3
At3g22810.1 68416.m02875 expressed protein ; expression support... 28 7.1
At1g68330.1 68414.m07805 expressed protein 28 7.1
At1g13050.1 68414.m01513 expressed protein 28 7.1
>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 199
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/51 (49%), Positives = 31/51 (60%)
Frame = +2
Query: 134 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCK 286
KC C K+VYA E A G+ +HK CFKC C+ L ++ S EG LYCK
Sbjct: 9 KCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCK 59
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/58 (37%), Positives = 29/58 (50%)
Frame = +2
Query: 134 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKF 307
KC C K+VY E+ +HK CFKC + +N + EG LYCK A+ F
Sbjct: 107 KCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLF 164
Score = 31.1 bits (67), Expect = 0.76
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 510 GRAWHKECFKCGDCMKRLDSTNCCEGSDKDIYCK 611
G +HK CFKC C RL ++ + +YCK
Sbjct: 27 GVGYHKSCFKCTHCKSRLQLSS-YSSMEGVLYCK 59
>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 200
Score = 55.6 bits (128), Expect = 3e-08
Identities = 23/51 (45%), Positives = 30/51 (58%)
Frame = +2
Query: 134 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCK 286
KC C K+VY E A G+ +HK CFKC C+ L +N S EG +YC+
Sbjct: 9 KCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCR 59
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/58 (37%), Positives = 29/58 (50%)
Frame = +2
Query: 134 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKF 307
KC C K+VY E+ +HK CFKC + +N + EG LYCK A+ F
Sbjct: 108 KCATCTKTVYPIEKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLF 165
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 510 GRAWHKECFKCGDCMKRLDSTNCCEGSDKDIYCK 611
G ++HK CFKC C RL +N + +YC+
Sbjct: 27 GISYHKACFKCSHCKSRLQLSN-YSSMEGVVYCR 59
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 51.6 bits (118), Expect = 5e-07
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +2
Query: 134 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCK 286
KC C K+VY + G+ +HK CF+C C+ L +N S +G LYCK
Sbjct: 9 KCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCK 59
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 134 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCK 286
KC C K+VY E+ G +HK CF+C L ++ + + LYC+
Sbjct: 103 KCAACEKTVYPLEKIQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCR 153
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 504 LRGRAWHKECFKCGDCMKRLDSTNCCEGSDKDIYCK 611
+ G +HK CF+C C L +N D +YCK
Sbjct: 25 IEGMPYHKSCFRCTHCKGTLQMSN-YSSMDGVLYCK 59
>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
SP|P29675 Pollen specific protein SF3 {Helianthus
annuus}; contains Pfam profile PF00412: LIM domain
Length = 213
Score = 50.8 bits (116), Expect = 9e-07
Identities = 21/51 (41%), Positives = 27/51 (52%)
Frame = +2
Query: 134 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCK 286
KC C K+VY + G+ +HK CF+C C L N S +G LYCK
Sbjct: 10 KCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCK 60
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +2
Query: 134 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKF 307
KC C K+VY E+ G +HK CF+C L ++ + +G LYCKV ++ F
Sbjct: 106 KCAACKKTVYPLEKMTMEGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLF 163
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 504 LRGRAWHKECFKCGDCMKRLDSTNCCEGSDKDIYCK 611
L G +HK CF+C C L N D +YCK
Sbjct: 26 LEGMPYHKSCFRCSHCNGTLVICN-YSSMDGVLYCK 60
>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
similarity to transcription factor Ntlim1 [Nicotiana
tabacum] GI:5689136, LIM domain protein WLIM-1
[Helianthus annuus] GI:5070280; contains Pfam profile
PF00412: LIM domain
Length = 190
Score = 50.8 bits (116), Expect = 9e-07
Identities = 23/54 (42%), Positives = 29/54 (53%)
Frame = +2
Query: 134 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCH 295
KC C K+VY E+ G +HK CFKC + +N HEG+LYCK H
Sbjct: 109 KCVGCDKTVYPIEKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHH 162
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +2
Query: 134 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCK 286
KC C K+VY ++ A +HK CF+C C+ L +N + EG LYC+
Sbjct: 9 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCR 59
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +2
Query: 134 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCK 286
KC C K+VY + G +HK CF+C C+ L +N S +G LYCK
Sbjct: 9 KCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCK 59
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +2
Query: 134 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKV 289
KC C K+VY E+ G +HK CF+C L ++ + G LYCKV
Sbjct: 105 KCATCKKTVYPLEKVTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKV 156
Score = 31.9 bits (69), Expect = 0.43
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 504 LRGRAWHKECFKCGDCMKRLDSTNCCEGSDKDIYCK 611
L G +HK CF+C C L +N D +YCK
Sbjct: 25 LEGNTYHKSCFRCTHCKGTLVISN-YSSMDGVLYCK 59
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +2
Query: 128 NPKCPKCGKSVYAAEERV---AGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCH 295
NP KC A E+ + A G WH CF C C++ + S+ G +Y K C+
Sbjct: 1234 NPPLSKCKDCKSAIEDGISINAYGSVWHPQCFCCLRCREPIAMNEISDLRG-MYHKPCY 1291
>At5g66610.1 68418.m08396 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 529
Score = 32.3 bits (70), Expect = 0.33
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Frame = +2
Query: 137 CPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHE--GELYC 283
C C ++ A G+ WH CF C C K + EH E YC
Sbjct: 201 CDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPIAMHEYKEHPFWKEKYC 251
>At1g16680.1 68414.m01997 DNAJ heat shock N-terminal
domain-containing protein / S-locus protein, putative
similar to S-locus protein 5 GI:6069485 from [Brassica
rapa]; contains Pfam profile PF00226 DnaJ domain
Length = 496
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +2
Query: 137 CPKCGKS-VYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCH 295
C KCG S ++ R +W C +CG + D EH+G L + H
Sbjct: 335 CTKCGNSHIWVCTNRSKAKARW---CQECGQYHQAKDGDGWVEHKGTLVFEKAH 385
>At1g04120.1 68414.m00401 ABC transporter family protein Strong
similarity to MRP-like ABC transporter gb|U92650 from A.
thaliana and canalicular multi-drug resistance protein
gb|L49379 from Rattus norvegicus
Length = 1514
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -1
Query: 626 LAIANFAVNIFVGTFATVGGVQPFHAVATFEALLVP 519
+A FA +IF+GT T GGV A+ATF L P
Sbjct: 542 VAAVTFATSIFLGTQLTAGGV--LSALATFRILQEP 575
>At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 255
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = +2
Query: 206 MCFKCGLCQKL---LDSTNCSEHEGELYCKVC 292
MC KC L Q + +T+C G+ +CK+C
Sbjct: 62 MCMKCLLIQPIGANCSNTSCKSSMGKYFCKIC 93
>At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 195
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = +2
Query: 206 MCFKCGLCQKL---LDSTNCSEHEGELYCKVC 292
MC KC + Q + + +CS G+ YCK+C
Sbjct: 2 MCMKCMIIQPVGASCSNISCSSSMGKYYCKIC 33
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
similarity to Pfam profile PF00412: LIM domain
Length = 702
Score = 29.9 bits (64), Expect = 1.8
Identities = 24/76 (31%), Positives = 27/76 (35%), Gaps = 14/76 (18%)
Frame = +2
Query: 119 PADNPKCPKCG--KSVYAAEERV-AGGLKWHKMCFKCGLCQKLLDSTNCSEHEG------ 271
P NP CG S EE V G+ WH CF C C K + H
Sbjct: 338 PEVNPPLSMCGGCNSAVKHEESVNILGVLWHPGCFCCRSCDKPIAIHELENHVSNSRGKF 397
Query: 272 -----ELYCKVCHARK 304
E YC VC +K
Sbjct: 398 HKSCYERYCYVCKEKK 413
>At4g14740.2 68417.m02267 expressed protein
Length = 475
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = -2
Query: 475 ATAARTALAGRSFSDRAGLQTSSVRPHTPRILALQVVAGVHREATSAATKAVAFGSEFAC 296
ATA ++ GR DR + R H +I A VAGV A + A A A + +C
Sbjct: 170 ATATQSKTVGRWLKDRREKKKEETRAHNAQIHAAVSVAGV---AAAVAAIAAATAASSSC 226
>At4g14740.1 68417.m02266 expressed protein
Length = 475
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = -2
Query: 475 ATAARTALAGRSFSDRAGLQTSSVRPHTPRILALQVVAGVHREATSAATKAVAFGSEFAC 296
ATA ++ GR DR + R H +I A VAGV A + A A A + +C
Sbjct: 170 ATATQSKTVGRWLKDRREKKKEETRAHNAQIHAAVSVAGV---AAAVAAIAAATAASSSC 226
>At4g36860.1 68417.m05226 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 351
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 185 GGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCH 295
GG+ WH CF C C K + S Y K+C+
Sbjct: 2 GGV-WHPECFCCNACDKPIIDYEFSMSGNRPYHKLCY 37
>At4g30790.1 68417.m04362 expressed protein
Length = 1148
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -2
Query: 589 EPSQQLVESSRFMQSPHLKHSLCHARPRSQHLLCSVHIATAARTAL 452
E +Q+L+E S+ M HL++ L AR +Q LC+ + TAL
Sbjct: 850 ETNQKLLEESQ-MNCAHLENCLHEAREEAQTHLCAADRRASQYTAL 894
>At5g66620.1 68418.m08397 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 644
Score = 28.3 bits (60), Expect = 5.3
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 14/73 (19%)
Frame = +2
Query: 128 NPKCPKCGKSVYAAEERVAG---GLKWHKMCFKCGLCQKLLDSTNCSEHEG--------- 271
NP CG +A E + G+ WH CF C C K + + H
Sbjct: 280 NPPPSLCGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPIAIHDIENHVSNSRGKFHKS 339
Query: 272 --ELYCKVCHARK 304
E YC VC +K
Sbjct: 340 CYERYCYVCKEKK 352
>At3g22810.1 68416.m02875 expressed protein ; expression supported
by MPSS
Length = 472
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -2
Query: 475 ATAARTALAGRSFSDRAGLQTSSVRPHTPRILALQVVAGVHREATSAATKAVAFGS 308
AT ++ GR DR + +R H +I A VAGV + A A S
Sbjct: 165 ATTTQSKTVGRWLKDRREKKKEEMRAHNAQIHAAVSVAGVAAAVAAIAAATAASSS 220
>At1g68330.1 68414.m07805 expressed protein
Length = 268
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 303 LRAWHTLQYSSPSCSEQLVESSNFWHRPHLKHILCHLRPPATRSSA 166
+R++H L S+ + + L H PH H L +PP RSS+
Sbjct: 159 IRSFHFLSRSNSTPNPNLDLLPKETHHPHKTHNLPKHKPPLRRSSS 204
>At1g13050.1 68414.m01513 expressed protein
Length = 317
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 9 RIRHEASPP*TVHASGSSTLVPTR 80
R RH+ PP T+H S SS +P R
Sbjct: 53 RGRHQTEPPETIHESPSSRPLPLR 76
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,691,648
Number of Sequences: 28952
Number of extensions: 318019
Number of successful extensions: 1000
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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