Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30605
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5051| Best HMM Match : DUF1193 (HMM E-Value=0.88)                   30   1.2  
SB_10994| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)                 27   6.5  
SB_18320| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  

>SB_5051| Best HMM Match : DUF1193 (HMM E-Value=0.88)
          Length = 634

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -1

Query: 499 TTHYRANWVPG---PPSRRCGKRGPNSSAAGKRR 407
           T H + +W PG   PP   CG+  P+++++G  R
Sbjct: 330 TAHAQKSWTPGCCFPPRLGCGRSYPDTNSSGTSR 363


>SB_10994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 487 RANWVPGPPSRRCGK 443
           R++W P PPS+ CG+
Sbjct: 139 RSDWTPAPPSKICGR 153


>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
          Length = 392

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -1

Query: 478 WVPGPPSRRCGKRGP 434
           WVPGP  RR   RGP
Sbjct: 264 WVPGPEQRRDNMRGP 278


>SB_18320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 425 RTVRPSLATPSRGGARYPIRPIVSR 499
           +T  PSL TP+  G  YPI+ + S+
Sbjct: 1   KTAFPSLTTPATKGTGYPIKTVQSQ 25


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,905,000
Number of Sequences: 59808
Number of extensions: 140668
Number of successful extensions: 421
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)