Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30597
(664 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0155 - 32031370-32031707,32033066-32033279 34 0.12
12_02_0847 + 23630937-23631099,23631200-23631396,23631604-236317... 32 0.47
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 31 0.82
05_04_0158 + 18613265-18615304 30 1.9
09_04_0161 - 15232074-15232139,15232299-15232406,15233417-152335... 29 2.5
02_04_0226 + 21073967-21074179,21074711-21074832,21074926-210753... 29 3.3
02_03_0357 + 18075171-18077240 29 3.3
>03_06_0155 - 32031370-32031707,32033066-32033279
Length = 183
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +3
Query: 432 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 611
IEE +QR EEA + +Q + +A K + + + G+ + R K+ E L E+
Sbjct: 98 IEELKQREEEATQAQQQADVKLLEAKKLASQYQKEADKCSSGMDTCEEAREKSSEALVEQ 157
Query: 612 KKIS 623
+K++
Sbjct: 158 RKLT 161
>12_02_0847 +
23630937-23631099,23631200-23631396,23631604-23631738,
23631904-23632077,23632195-23632407,23632507-23632751,
23632890-23632930,23633200-23633238,23633552-23633565
Length = 406
Score = 31.9 bits (69), Expect = 0.47
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +3
Query: 429 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 608
+I E+R+R + ++ A+L+AMK+ N ++ E N +LE K+QL+E
Sbjct: 41 EIAEERERFQLEQRGNDALLEAMKE-ELVAANNELEAAKEEISRKNNELE--SVKKQLQE 97
Query: 609 EK 614
+
Sbjct: 98 SE 99
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 31.1 bits (67), Expect = 0.82
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +3
Query: 438 EKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 608
E+ ++ ++ + AMLQ +KD N +Q+K ++ ++E +TK Q +E
Sbjct: 1431 EEAKKFQKIKMDLLAMLQRVKDVENLNRNEKMQRKDMEEKIARQRMEIEETKRQRDE 1487
>05_04_0158 + 18613265-18615304
Length = 679
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Frame = +3
Query: 435 EEKRQRLEEAEKKRQAML-----QAMKDASKTGPNFTIQKK----SENFGLSNAQLERNK 587
+EK ++ +E E K Q L +AMK KTG N I+KK +E +A++ ++K
Sbjct: 608 QEKVEKNQEKEMKIQEKLGEIFDKAMKSEEKTGQNPGIEKKIQDTAEKKQEHDARVVQDK 667
Query: 588 TKEQLEEEKKI 620
++ +E KKI
Sbjct: 668 VEKIQDEAKKI 678
>09_04_0161 -
15232074-15232139,15232299-15232406,15233417-15233506,
15233617-15233733,15234408-15234527,15234930-15236168
Length = 579
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +1
Query: 157 NKRVDRRSRVREIQNSSSVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNALKRSRPSAR 336
N+ D SR + ++ S T + R S TS N P+R S++ + S PS+R
Sbjct: 34 NRGRDVASRYKNGLSAHSAATTARRCTSPSPGRTSANECTPEPKRAQSADRRRPSTPSSR 93
Query: 337 FLVP 348
P
Sbjct: 94 VSTP 97
>02_04_0226 +
21073967-21074179,21074711-21074832,21074926-21075370,
21075453-21075559,21075656-21076463,21076691-21077128,
21077349-21077537,21077616-21077843,21077943-21078140,
21078304-21078379,21078452-21078593,21078749-21079238
Length = 1151
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +3
Query: 447 QRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISL 626
Q+ AEK+R +L+ K ++ G +Q + + +R+K KEQLE++ + +
Sbjct: 205 QKRTAAEKRRTGLLEGEKRRAQ-GRFSQVQLAARTLSCQR-EADRSKLKEQLEDKLQRAK 262
Query: 627 SIRIKPLTIRGS 662
R + L RGS
Sbjct: 263 RQRAEYLKQRGS 274
>02_03_0357 + 18075171-18077240
Length = 689
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Frame = +3
Query: 528 TIQKKSENFGLSNAQLERNKT-----KEQLEEEKKISLSIRIKP 644
+I++K +NF L+ ++ RN+T QL EE KIS+S + P
Sbjct: 594 SIKEKFKNFNLAFEEIYRNQTTWKVPDPQLREELKISISENVIP 637
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,874,596
Number of Sequences: 37544
Number of extensions: 203070
Number of successful extensions: 827
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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