Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30596
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po... 134 1e-32
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 28 1.7
SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.3
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 27 2.3
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 27 4.0
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 27 4.0
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 26 5.3
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 26 7.0
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 26 7.0
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 26 7.0
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 26 7.0
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S... 25 9.2
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 25 9.2
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 25 9.2
>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 235
Score = 134 bits (324), Expect = 1e-32
Identities = 63/185 (34%), Positives = 111/185 (60%), Gaps = 6/185 (3%)
Frame = +1
Query: 244 RLFKFNQMDFEFAAWQMVYLFIAPQKVFRNFNYRKHTKSQFARDDPAFLVLLSIWLFLSS 423
RL K +QMDFE A W M LF AP++V+R+ RK +++ R+D +F+VL S + +S+
Sbjct: 10 RLLKLSQMDFERAWWDMANLFRAPRRVYRSITLRKQNINRYGREDFSFIVLFSCMIVISA 69
Query: 424 ICFGLALDLTVGKVALFMLFVVFVDFIGAGILVSTLFWYLSNKHLRRDPE------GPDV 585
+ + L T + F++FVDF G++++T++++++ + L + + +
Sbjct: 70 LLWALFYMNTPKGYVTTITFMLFVDFGAVGVIMATMYYFIAKRFLMKSNDTILSSTDYQL 129
Query: 586 EWGYAFDVHINAFFPPLSLLHCFQIVLFNSILSQAGFVSCLVSNTFWLASIIYYMYISFL 765
EW Y FDVH N+FFP LL+ Q+ L ++++ F+S + NT +L ++ YY Y++F+
Sbjct: 130 EWNYCFDVHCNSFFPSFVLLYVIQLFLL-PVITRDNFISLFMGNTLYLVALCYYSYLTFI 188
Query: 766 GYSNL 780
GY L
Sbjct: 189 GYQIL 193
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 499 FIGAGILVSTLFWYLSNKHLRRDPEGPDVEWGYAFDVH--INAFFPPLSLL 645
++ + VST +LS +RDP+ + + +++H +N F P +SLL
Sbjct: 557 YVVGNVSVSTKKEHLSYDGRKRDPQYSNADGSCLWEIHPFLNHFHPTVSLL 607
>SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 90
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +1
Query: 388 LVLLSIWLFLSSICFGLALDLT 453
LV +S WLF S+ICFG++L L+
Sbjct: 44 LVSMS-WLFRSTICFGVSLFLS 64
>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 424 ICFGLALDLTVGKVALFMLFVVFVDFIGAGILVSTLFWYLS 546
+CF L++ + + ++ + F F+GA + V+T FW+ S
Sbjct: 247 LCFAAPLNILLNYLLVWHPTIGF-GFLGAPVAVATTFWFQS 286
Score = 26.2 bits (55), Expect = 5.3
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 610 HINAFFPPLSLLHCFQIVLFNSILSQAGFVSC--LVSNTFWLASIIYYMYISF 762
++ F PL++L + +V +I GF+ V+ TFW SI +YI F
Sbjct: 245 YVLCFAAPLNILLNYLLVWHPTI--GFGFLGAPVAVATTFWFQSICLILYICF 295
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = +1
Query: 103 NKIKMKYSTSPTPNLH----NYPRSTSPLPAPANYQPTTASASVKRYK 234
N Y+ S P+ H NYP S+ P+P Y ++ S RY+
Sbjct: 293 NGASTNYNASRPPSNHPHSSNYPSSSRRKPSPDRYSNYSSRGSGGRYR 340
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 680 CLKRASSRVWSQTPSGSPRSYTTCTFPFWDTA 775
C + AS+R+WS + +Y T P WD A
Sbjct: 397 CSEDASARLWSVDTKTALVAYKGHTGPVWDVA 428
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = -2
Query: 545 LRYQNNVETSIPAPMKXXXXXXXXXXXTLPTVRSSANPKHIDDKNNQMLSNTKN 384
L ++ N PAP +P + SA KH N++L+NT N
Sbjct: 368 LNFRGNRYVEFPAPYDDYTTNQILLEDYMPGIPLSAFLKHKSGPFNKLLANTGN 421
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 106 KIKMKYSTSPTPNLHNYPRSTSPLPAPANYQPTTASASVKRYKYLKRLFKF 258
+ + ++STS P+L S+ P+P+ + +T+ AS K +Y K L F
Sbjct: 20 RARNRWSTSHIPSLSEINPSSFQSPSPSPFASSTSLAS-KPARYSKPLGLF 69
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 29 NEIKNCLSIYIILYCNHEIIY 91
N++++CL Y I YCN I++
Sbjct: 170 NQLESCLEKYGIDYCNDAILF 190
>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = +1
Query: 469 LFMLFVVFVDFIGAGILVSTLFWYLSNKHLRRDPEGPDVEWGYAFDVH 612
+++ FVD +G L F + L + G + W Y F +H
Sbjct: 289 MYLTHHYFVDLVGGMCLAIICFVFAQKLRLPQLQTGKILRWEYEFVIH 336
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 115 MKYSTSPTPNLHNYPRSTSP 174
MKY TP YPRST P
Sbjct: 426 MKYLQIDTPESKEYPRSTRP 445
>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +2
Query: 263 KWISNSPLGKWFTCSLPLRKYSET 334
+W+ N+P +WF P+R + T
Sbjct: 83 RWLRNAPPYRWFCHYFPIRLHKTT 106
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 163 STSPLPAPANYQPTTASASVKRYKYLKRLFKFNQMDF 273
S P P + PT++S S ++ KRL+ F F
Sbjct: 67 SLPPFDHPPSKNPTSSSLSTRKRWRQKRLWSFKNFPF 103
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 94 GS*NKIKMKYSTSPTPNLHNYPRSTSPLPAPANYQPTTAS 213
G+ K ST P P+ P +SP P PA +P S
Sbjct: 165 GAEQKESAPSSTKPAPDAKE-PEFSSPKPKPAKSEPVKQS 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,104,962
Number of Sequences: 5004
Number of extensions: 64806
Number of successful extensions: 218
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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