Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30596
(780 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0592 + 26477974-26479311 31 0.78
01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266 30 2.4
05_06_0046 - 25157093-25157431,25157810-25157928,25158024-251581... 29 5.5
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 29 5.5
10_08_0680 - 19846481-19846767,19847192-19847379,19847467-198476... 28 7.2
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 28 7.2
01_06_0205 - 27495030-27495128,27495397-27496265,27496352-274965... 28 7.2
12_02_0706 + 22319293-22319803,22321625-22321766,22322223-223234... 28 9.6
08_01_0619 + 5412058-5413224,5413357-5413476,5413755-5413831,541... 28 9.6
07_03_0982 + 23116343-23117089,23117227-23117313,23117424-231175... 28 9.6
02_04_0260 - 21350060-21350269,21350544-21350604,21350834-213509... 28 9.6
>04_04_0592 + 26477974-26479311
Length = 445
Score = 31.5 bits (68), Expect = 0.78
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +1
Query: 133 PTPNLHNYPRSTSPLP---APANYQPTTASASVKRYK-YLKRLFKFNQMDFEFAAWQMVY 300
PTP P T PLP PA+ + AS KR K LK L + FAA +
Sbjct: 89 PTPTTTTTPTPTPPLPPPAPPASPAKSNKKASAKRNKSLLKLLLRETPRTRRFAA-RAGE 147
Query: 301 LFIAPQKVFRNF 336
LF +P+ R F
Sbjct: 148 LFASPRPCTRRF 159
>01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266
Length = 272
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 133 PTPNLHNYPRSTSPLPAPANYQPTTASASV 222
P+P + P STSP P PA +P+ ASV
Sbjct: 41 PSPPRASIPVSTSPAPLPAPAKPSLPGASV 70
>05_06_0046 -
25157093-25157431,25157810-25157928,25158024-25158189,
25158289-25158415,25158490-25158590,25158719-25158905,
25159000-25159100,25159220-25160194,25160325-25160423,
25160500-25160972,25161307-25161420,25161830-25161900,
25162015-25162086,25162334-25162377
Length = 995
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 230 INTSRDCSNLIKWISNSPLGKWFTCSLPLRKYSETL 337
I +++DC N KW S SP KW C L + L
Sbjct: 756 IGSNQDCGNNWKWPSGSP-QKWVLCCSSLSSSEKEL 790
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 502 IGAGILVSTLFWYLSNKHLRRDPEGPDVEWGYAFDVHINAFF 627
+G +L+S +FW R EGPD G FD I A F
Sbjct: 66 LGVAVLLSAVFWLPPFARRGRGSEGPDP--GAGFDADIVASF 105
>10_08_0680 -
19846481-19846767,19847192-19847379,19847467-19847666,
19847799-19848060,19848652-19848758
Length = 347
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 622 FFPPLSLLHCFQIVLFNSILSQAGFVSCLVSNTFWLASIIYYMYISFLGYS 774
++ L H + ++ N+ +A + SC +T W + Y + +F+GYS
Sbjct: 163 YYEYTGLWHIYGLLAMNAWFWRAIYHSC---DTVWTEKLYYSSFAAFIGYS 210
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -2
Query: 668 KSTIWKQCSS---ESGGKNALMCTSKA*PHSTSGPSGSRR 558
+++ W CS E+GG N + T +A ++SGPS +
Sbjct: 2591 RASEWSGCSDDEQETGGSNVVQSTKEAPAAASSGPSSKNK 2630
>01_06_0205 -
27495030-27495128,27495397-27496265,27496352-27496511,
27497136-27497208,27497311-27497430,27498454-27498618,
27498695-27498785,27499381-27499465,27499555-27499740,
27499843-27499899,27499998-27500282
Length = 729
Score = 28.3 bits (60), Expect = 7.2
Identities = 24/83 (28%), Positives = 34/83 (40%)
Frame = +1
Query: 124 STSPTPNLHNYPRSTSPLPAPANYQPTTASASVKRYKYLKRLFKFNQMDFEFAAWQMVYL 303
+ SP P LHN +TS L A+ A S+ Y RL +Q +F W+ +
Sbjct: 253 NASPFPALHNQISNTSSLSEVAH---AVAVKSIFHIYYNPRL---SQSEFIIPYWKFMRS 306
Query: 304 FIAPQKVFRNFNYRKHTKSQFAR 372
F P V F R ++ R
Sbjct: 307 FSQPFSVGMRFKLRYESEDASER 329
>12_02_0706 +
22319293-22319803,22321625-22321766,22322223-22323451,
22323471-22323916,22324001-22324510
Length = 945
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 652 FQIVLFNSILSQAGFVSCLVSNTFWLASII 741
+ +VL+ +++ GFVS L FW +II
Sbjct: 182 YLVVLWTTVILLGGFVSALEKKDFWCFTII 211
>08_01_0619 +
5412058-5413224,5413357-5413476,5413755-5413831,
5414201-5414321
Length = 494
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 118 KYSTSPTPNLHNYPRSTSPLPAPANYQPTTASA 216
K++T+P P H+ P + P P P P A
Sbjct: 30 KHATNPNPRRHHRPSPSIPPPPPPQRPPAATVA 62
>07_03_0982 +
23116343-23117089,23117227-23117313,23117424-23117555,
23118135-23118269,23118644-23118709,23118797-23118907,
23119237-23119329,23119555-23119659,23119752-23119829
Length = 517
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 139 PNLHNYPRSTSPLPAP-ANYQPTTASASVK 225
PN YP +SP PAP +Y PT A + +
Sbjct: 83 PNPAPYPPESSPAPAPYYSYPPTAAGVATQ 112
>02_04_0260 -
21350060-21350269,21350544-21350604,21350834-21350901,
21351274-21351483,21351684-21351724,21351923-21351972,
21352084-21352172,21352265-21352339,21352539-21352656,
21352689-21352771,21352854-21352970,21353857-21354074,
21354184-21354241,21354356-21354508
Length = 516
Score = 27.9 bits (59), Expect = 9.6
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 10/159 (6%)
Frame = +1
Query: 334 FNYRKHTKSQFARDDPAFLVLLSIWLFLSSICFGLALDLTVGKVALFMLFVVFVDFIGAG 513
FN+ K+ + DD +V +S +L+ I F L L++ V +++ V FV + G
Sbjct: 283 FNFYKYM-IRALEDDFKKVVGISWYLWAMLIIF-LLLNVQGWYVYIWISAVPFVMLLVVG 340
Query: 514 I----LVSTLFWYLSNKHLRRDPE---GPDVEWGYAFDVHINAFFPPLSLL-HCFQIVLF 669
+++ L ++ KH + E P E + I + L + F+I F
Sbjct: 341 TKLEHIITELAHQVAEKHTAIEGELVVSPSDELFWFHRPKIVLLLIHIVLFQNAFEIAFF 400
Query: 670 NSILSQAGFVSCLVSNTFWLASIIYYMYISFL--GYSNL 780
+L GF SC++ N ++ + + IS L GYS L
Sbjct: 401 FWLLVTYGFKSCIMGNKGYVIARLVISVISQLLCGYSTL 439
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,418,235
Number of Sequences: 37544
Number of extensions: 399056
Number of successful extensions: 1323
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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