Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30596
(780 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25446| Best HMM Match : No HMM Matches (HMM E-Value=.) 84 1e-16
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.60
SB_45192| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_8021| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09) 29 3.2
SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_19650| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05) 29 4.2
SB_20760| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_33785| Best HMM Match : DUF23 (HMM E-Value=8.2e-36) 28 9.8
SB_14464| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
>SB_25446| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 517
Score = 83.8 bits (198), Expect = 1e-16
Identities = 35/66 (53%), Positives = 48/66 (72%)
Frame = +1
Query: 583 VEWGYAFDVHINAFFPPLSLLHCFQIVLFNSILSQAGFVSCLVSNTFWLASIIYYMYISF 762
VEWGYAFDVH+NAFFP L +LH Q+ I+ F+S + NT WL +++YY+YI+F
Sbjct: 57 VEWGYAFDVHLNAFFPLLIILHVVQLFF---IIDHPWFISRFIGNTLWLIALVYYVYITF 113
Query: 763 LGYSNL 780
LGYS++
Sbjct: 114 LGYSDI 119
Score = 58.8 bits (136), Expect = 5e-09
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = +1
Query: 223 KRYKYLKRLFKFNQMDFEFAAWQMVYLFIAPQKVFRNFNY 342
+R+KYLKR+ KF MDFEFA WQM+YL ++PQKV Y
Sbjct: 5 RRWKYLKRILKFRHMDFEFALWQMLYLCVSPQKVIVTNRY 44
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 31.9 bits (69), Expect = 0.60
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +1
Query: 61 NFIL*SRNNIRGS*NKIKMKYSTSPTPNLHNYPRSTSPLPAPANYQPTTAS 213
NFIL + NNI + NKI +T+ T N YP S P P P A+
Sbjct: 12 NFILTNTNNIATTANKIATTVTTT-TANFTYYPHFISSSPPPPPPSPPAAA 61
>SB_45192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 634
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 148 HNYPRSTSPLPAPANYQPTTASASVKR 228
H YP P+P P +Y P + + S KR
Sbjct: 193 HYYPTIAEPVPGPGSYNPRSYTTSSKR 219
>SB_8021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -1
Query: 384 CRVVSRKL*FCMLPIVKVSEYFLRGNEQVNHLPSGEFEIHLIKFEQSLEVFIA 226
CR+V L + +P +K+S + N NH+P+ EF + + + ++ F+A
Sbjct: 20 CRIVQGHLIYRRVPCLKISTKIIDDN---NHVPTIEFALRKMSDDATVVTFLA 69
>SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09)
Length = 669
Score = 29.5 bits (63), Expect = 3.2
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Frame = +1
Query: 460 KVALFML-FVVFVDFIGAGILVSTLFWYLSNKHLRRDPE-GP--DVEWGYAFDVHINAFF 627
K LF FV + I +GI S ++S++H+ + PE GP W + F V +N
Sbjct: 81 KYLLFAFNFVFWCSKIISGIYSSQ---FISHEHVTKTPEKGPRSSTIWSFVFLVLVNKPS 137
Query: 628 PPLSLLHCFQIVLFNSILSQAGFVSCLVSNTFWLASI 738
PPL +L I S+L+ G + + + +A I
Sbjct: 138 PPLRVLISRPI----SVLAFLGIIKTTETPLYQIAGI 170
>SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 884
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 145 LHNYPRST-SPLPAPANYQPTTASASVKRYKYLKRLFKFNQMDFEFAAW 288
+ N+P +T SP+ +P Y AS+ RY+ L+ + ++D+ W
Sbjct: 392 MSNWPSTTKSPIDSPMKYFSCGASSVKDRYRLLRESCQSEKLDYLRCNW 440
>SB_19650| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05)
Length = 300
Score = 29.1 bits (62), Expect = 4.2
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +1
Query: 193 YQPTTASASVKRYKYLKRLFKFNQMDFEFAAWQMVYLFIAPQKVFRNFNYRKHTKSQFAR 372
Y + + V Y YL + F + F A+++ L + R+F +H S+
Sbjct: 191 YDKSVPAFGVMLYSYLVLFYVFPCIILSFVAFRVTRLLNRRRTPRRSF---QHKGSRLLI 247
Query: 373 DDP-AFLVLLSIWLFLSSICFGLALDLTVGKVALFMLFVVF 492
+ AF+V S+W+ L+++ + +LT + + L V+F
Sbjct: 248 NVLIAFVVPYSLWVLLTALRLVINPELTYQQDTIVPLLVIF 288
>SB_20760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 230
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Frame = +1
Query: 133 PTPNLHNYPRSTSPLPAPANYQPT-----TASASVKRYKYLKRLF 252
P PN + YP + PA A Y+ T T SA V R+ Y F
Sbjct: 185 PGPNPNEYPATNMTNPANARYRKTGLTGLTGSADVVRFMYASVTF 229
>SB_33785| Best HMM Match : DUF23 (HMM E-Value=8.2e-36)
Length = 338
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 613 INAFFPPLSLLHCFQIVLFNSILSQAGFVSCLVSNTFW 726
+NAF P HCFQ V+F+S S LVS F+
Sbjct: 204 LNAFHRPYHCGHCFQSVVFSSNARFPRQKSELVSQRFF 241
>SB_14464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 199
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 112 KMKYSTSPTPNLHNYPRSTSPLPAP 186
K K ++SPTP N +TSP P P
Sbjct: 30 KPKTTSSPTPTRPNTTATTSPTPTP 54
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,866,061
Number of Sequences: 59808
Number of extensions: 483860
Number of successful extensions: 1460
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1458
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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