Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30596
         (780 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15240.1 68415.m01738 UNC-50 family protein contains Pfam pro...   144   4e-35
At2g24170.1 68415.m02888 endomembrane protein 70, putative simil...    31   0.65 
At5g46240.1 68418.m05691 inward rectifying potassium channel (KA...    30   2.0  
At5g44860.1 68418.m05499 expressed protein strong similarity to ...    30   2.0  
At3g21250.1 68416.m02685 ABC transporter family protein similar ...    29   2.6  
At5g38380.2 68418.m04636 expressed protein                             28   6.0  
At4g32890.1 68417.m04680 zinc finger (GATA type) family protein ...    28   6.0  
At3g60350.1 68416.m06749 armadillo/beta-catenin repeat family pr...    28   6.0  
At1g14470.1 68414.m01716 pentatricopeptide (PPR) repeat-containi...    28   6.0  

>At2g15240.1 68415.m01738 UNC-50 family protein contains Pfam
           profile PF05216: UNC-50 family; contains 5 transmembrane
           domains; similar to inner nuclear membrane RNA-binding
           protein unc-50 related protein (GI:2735550) [Rattus
           norvegicus]
          Length = 252

 Score =  144 bits (350), Expect = 4e-35
 Identities = 70/208 (33%), Positives = 121/208 (58%), Gaps = 5/208 (2%)
 Frame = +1

Query: 172 PLPAPANYQPTTASASVKRYKYLKRLFKFNQMDFEFAAWQMVYLFIAPQKVFRNFNYRKH 351
           P  + +    +++ A+    +Y +R+ K+ QMD E+  WQM+ L  +P+ V+++  Y K 
Sbjct: 3   PTTSRSRSSSSSSRANPMFLQYFRRIVKWQQMDVEYTFWQMLNLCTSPKVVYQHTKYHKQ 62

Query: 352 TKSQFARDDPAFLVLLSIWLFLSSICFGLALDLTVGKVALFMLFVVFVDFIGAGILVSTL 531
           TK+Q+ARDDPAF+V+ S+ L ++++ + +  D +     + ++ V+F  F+  G +++T 
Sbjct: 63  TKNQWARDDPAFIVICSLLLVVATVAYCVTYDHSSSHAVVVVVSVLFTHFLITGAVIATC 122

Query: 532 FWYLSNKHLRRDPEGPD-----VEWGYAFDVHINAFFPPLSLLHCFQIVLFNSILSQAGF 696
            W+L+N +LR +          VEW Y FDVH N+FFP   LL+     L + +L   GF
Sbjct: 123 CWFLTNSYLREETPNSHVVEQRVEWLYTFDVHCNSFFPMFVLLYVVHYFL-SPLLIAHGF 181

Query: 697 VSCLVSNTFWLASIIYYMYISFLGYSNL 780
           +  L+SN  ++    YY Y++FLGY  L
Sbjct: 182 IPLLLSNLLFMVGASYYHYLNFLGYDVL 209


>At2g24170.1 68415.m02888 endomembrane protein 70, putative similar
           to  MURA transposase of maize Mutator transposon
          Length = 637

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
 Frame = +1

Query: 475 MLFVVFVDFIGAGILVSTLFWYLSNKHLRRDPEGPDVEWGYAFDVHINAFFPPLS--LL- 645
           M+ V+F+  + A I++ TL+  +SN +     E    E G+   VH + F PP +  LL 
Sbjct: 282 MMIVLFLSGMVAMIMLRTLYRDISNYNQLESHEEALEETGWKL-VHGDVFRPPTNPELLC 340

Query: 646 -------HCFQIVLFNSILSQAGFVSCLVSNTFWLASIIYYMYISFL-GYSN 777
                   CF ++L   I +  GF+S         A ++ ++++  L GY++
Sbjct: 341 VYAGTGVQCFGMILVTMIFACLGFLSPSNRGGLMTAMLLLWVFMGLLAGYAS 392


>At5g46240.1 68418.m05691 inward rectifying potassium channel (KAT1)
           identical to K+ channel [Arabidopsis thaliana]
           gi|1165000|emb|CAA63601; Shaker-type channel (1P/6TM),
           PMID:11500563
          Length = 677

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
 Frame = +1

Query: 319 KVFRNFNYRKHTKSQFARDDPAFLVLLSIWLFLSS-IC-FGLALDLTVGKVALFMLFVVF 492
           ++ ++   RKH  S F     A+ + L + +  S+ IC F  A  +T  K A+F++  + 
Sbjct: 40  RINQSTKLRKHIISPFNPRYRAWEMWLVLLVIYSAWICPFQFAF-ITYKKDAIFIIDNIV 98

Query: 493 VDFIGAGILVSTLFWYL-SNKHLRRD-PEGPDVEW---GYAFDVHINAFFPPLSLL 645
             F    I+++    YL S+ +L  D P+   + +    +AFDV   A F PLSLL
Sbjct: 99  NGFFAIDIILTFFVAYLDSHSYLLVDSPKKIAIRYLSTWFAFDVCSTAPFQPLSLL 154


>At5g44860.1 68418.m05499 expressed protein strong similarity to
           unknown protein (gb AAC79135.1)
          Length = 321

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/54 (31%), Positives = 33/54 (61%)
 Frame = +1

Query: 388 LVLLSIWLFLSSICFGLALDLTVGKVALFMLFVVFVDFIGAGILVSTLFWYLSN 549
           LV  S++L    +   +A+DL    +A+F + V+FV F+G  + + T +W+L++
Sbjct: 141 LVYNSVFLLFLVVLI-VAIDLQSVILAVFSMVVIFVLFLGVHVYM-TAWWHLAS 192


>At3g21250.1 68416.m02685 ABC transporter family protein similar to
           MRP-like ABC transporter GB:AAC49791 from [Arabidopsis
           thaliana]
          Length = 1294

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 661 VLFNSILSQAGFVSCLVSNTFWLASII 741
           +L++S+L Q GFV    ++T+WLA  I
Sbjct: 730 LLWSSVLGQVGFVVFQAASTYWLAFAI 756


>At5g38380.2 68418.m04636 expressed protein
          Length = 336

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 400 SIWLFLSSICFGLALDLTVGKVALFMLFVVF 492
           S W FLS+I FG+ L   V  +A   L +VF
Sbjct: 228 SAWAFLSTIIFGIILIFYVDNIAEERLHMVF 258


>At4g32890.1 68417.m04680 zinc finger (GATA type) family protein
           GATA transcription factor 3, Arabidopsis thaliana,
           gb:Y13650
          Length = 308

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 647 CSSESGGKNALMCTSKA*PHSTSGPSGSRRRC 552
           C    GG+  L C ++  P   +GP G +  C
Sbjct: 190 CGESGGGRRCLHCATEKTPQWRTGPMGPKTLC 221


>At3g60350.1 68416.m06749 armadillo/beta-catenin repeat family
           protein / F-box family protein contains Pfam profiles
           PF00514: Armadillo/beta-catenin-like repeat, PF00646:
           F-box domain; similar to F-box protein FBL2 (GI:6010699)
           [Rattus norvegicus]
          Length = 928

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 679 LSQAGFVSCLVSNTFWLASIIYYMYISFLGYSNL 780
           LS  GF+ CL  N   L  ++   Y+S  G SN+
Sbjct: 207 LSDLGFLDCLNINEEALGKVVSLRYLSVAGTSNI 240


>At1g14470.1 68414.m01716 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 540

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +1

Query: 625 FPPLSLLHCFQIVLFNSILSQAGFVSCLVSNTFWLASIIYYMYISF 762
           FP L+ +H  Q+++FNS+  Q+ + S ++S    L +  YY  + F
Sbjct: 19  FPQLNQIHA-QLIVFNSLPRQSYWASRIISCCTRLRAPSYYTRLIF 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,876,926
Number of Sequences: 28952
Number of extensions: 324928
Number of successful extensions: 1084
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)