Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30592
(569 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 95 5e-20
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 86 2e-17
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670... 81 5e-16
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 29 2.6
12_02_0312 + 17395716-17398112 29 3.4
09_02_0115 + 4413714-4414475 29 3.4
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100... 28 4.6
11_06_0042 + 19550260-19550278,19550418-19550530,19551841-195520... 28 6.0
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 28 6.0
01_06_0035 + 25782410-25783384,25784130-25784696 28 6.0
05_06_0131 - 25888434-25888931,25889105-25889155,25889249-258893... 27 8.0
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 94.7 bits (225), Expect = 5e-20
Identities = 55/156 (35%), Positives = 83/156 (53%)
Frame = +1
Query: 67 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 246
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ KI
Sbjct: 1 MNDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
Query: 247 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 426
I+ S LN +R+KVL+ ++D V ++ ++A K+L V + Y LL L+VQ
Sbjct: 61 QVEVRKKIEYSMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQ 120
Query: 427 ALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNK 534
L +L EP V +R R+ D VES+L A+ +Y +K
Sbjct: 121 GLLRLKEPAVLLRCRKEDHHHVESVLHSAKNEYASK 156
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 86.2 bits (204), Expect = 2e-17
Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 11/169 (6%)
Frame = +1
Query: 67 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 246
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ +I
Sbjct: 1 MNDADVGKQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRIRQDYERKAK 60
Query: 247 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIV- 423
I+ S LN AR+KVL+ ++ V + ++A K L V KD Y ++L LIV
Sbjct: 61 QVDVGRKIEYSTQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQ 120
Query: 424 ----------QALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIK 540
Q+L +L EP+V +R R+ D+ VES+L A+ +Y K K
Sbjct: 121 RKDSEIIDQIQSLLRLREPSVVLRCREADRGHVESVLEAAKKEYAEKAK 169
>01_01_0858 -
6699126-6699128,6699219-6699318,6700052-6700278,
6701032-6701188,6701422-6701522,6702147-6702251
Length = 230
Score = 81.4 bits (192), Expect = 5e-16
Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 10/166 (6%)
Frame = +1
Query: 67 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 246
++D DV +Q+K M FI Q F IEK +LV+ ++ +I
Sbjct: 2 MNDGDVARQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRIRLEFERNEK 61
Query: 247 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 426
I+ S LN +RL+VL+ ++D ++L+ A K L + +D +Y LL IVQ
Sbjct: 62 QGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQ 121
Query: 427 ----------ALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNK 534
+L +L EP V +R R+ D+ LVES+L A+ +Y +K
Sbjct: 122 DKLTKKNPEQSLLRLKEPAVILRCRKEDRELVESVLESAKNEYADK 167
>10_08_0762 -
20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +1
Query: 295 ARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQA 429
+RL++LK R+D++ N LD+A K+ E D + E V +QA
Sbjct: 826 SRLRILKCRDDNI-NSLDDAIKQHVEACTDQPNWDEDGVVAKIQA 869
>12_02_0312 + 17395716-17398112
Length = 798
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 268 IQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 411
++ +N+ N L VLK+ D + + L L+ PKD +++ ELL+
Sbjct: 383 VKETNIPNTDILSVLKLSYDALPSDLRACFASLSTFPKDYEIFRELLI 430
>09_02_0115 + 4413714-4414475
Length = 253
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 396 LRAAGHTYCAGSLPAHGTHCHHPRASNRQGSGG 494
LR H+ + SLP H HHPR +GS G
Sbjct: 20 LRLFSHSSASASLPLLLGHFHHPRPVPPRGSPG 52
>03_06_0108 +
31708713-31709079,31709258-31709822,31709933-31710015,
31710231-31710319,31710486-31710559,31710654-31710704,
31710807-31710883,31711454-31712031,31712388-31712555,
31713364-31713417,31713456-31713467,31713554-31713715
Length = 759
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 414 TYCAGSLPAHGTHCHHPRASNRQGSGG 494
TYCAG + G H HH ++Q GG
Sbjct: 34 TYCAGGVDDVGHHHHHHVHQHQQQHGG 60
>11_06_0042 +
19550260-19550278,19550418-19550530,19551841-19552051,
19552164-19552401,19552662-19552752,19552883-19552917,
19554179-19554452
Length = 326
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 435 PAHGTHCHHPRASNRQGSGGVPARKSPNRL 524
P+ C HP + R SGG A S NR+
Sbjct: 289 PSRPAFCMHPADATRTASGGETAAASANRV 318
>03_01_0005 +
46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +3
Query: 375 AKGHQTVLRAAGHTYCAGSLPAHGTHCHHPRASNRQGSGGVPARKSPNRLQE 530
+KG V+RA Y G HG H + + S + GV + P R E
Sbjct: 115 SKGSHQVMRAEWEKYLLGKAELHGLHRKNKKTSQQLKGFGVLDGEVPMRSGE 166
>01_06_0035 + 25782410-25783384,25784130-25784696
Length = 513
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +3
Query: 408 GHTYCAGSLPAHGTHCHHPRASNRQGSGGVPARKSPNRLQE*DQEGCCVESG 563
G Y + L A GT HPRAS R G GG + R D+ G + G
Sbjct: 449 GGGYVSQKLHA-GTGRRHPRASRRGGGGGAVVATTTRRGVFGDEIGMEISHG 499
>05_06_0131 -
25888434-25888931,25889105-25889155,25889249-25889331,
25889733-25889826,25890188-25890310,25890909-25891154
Length = 364
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 346 QVHYVRDLHELSVPSDELGSACSKIGSSSEVQP 248
Q H + E S P L S+C +I SS+ P
Sbjct: 219 QTHSAKSCEESSEPFSRLASSCHQIQSSNRTHP 251
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,044,639
Number of Sequences: 37544
Number of extensions: 274832
Number of successful extensions: 807
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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