Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30592
         (569 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h at...   129   2e-30
Z84574-7|CAB06544.3|  928|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AL022593-3|CAA18635.3|  928|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z81513-2|CAB04186.2|  489|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF515833-1|AAM55225.1|  489|Caenorhabditis elegans synaptonemal ...    27   9.5  

>AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h
           atpase protein 8 protein.
          Length = 226

 Score =  129 bits (311), Expect = 2e-30
 Identities = 70/146 (47%), Positives = 84/146 (57%)
 Frame = +1

Query: 67  LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 246
           +SD DVQKQ++HMMAFIEQ                FNIEKGRLVQQQR KIM        
Sbjct: 3   ISDNDVQKQLRHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRQKIMEFFEKKEK 62

Query: 247 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 426
                  IQ+SN LN  RL+ LK REDH+  VLDEAR  L+ +  D   Y  +L  L++Q
Sbjct: 63  QVELQRKIQASNSLNAGRLRCLKAREDHIGAVLDEARSNLSRISGDAARYPAILKGLVMQ 122

Query: 427 ALFQLMEPTVTIRVRQTDKALVESLL 504
            L QL+E  V +R R+ D  LVE LL
Sbjct: 123 GLLQLLEKEVVLRCREKDLRLVEQLL 148


>Z84574-7|CAB06544.3|  928|Caenorhabditis elegans Hypothetical
           protein F33E2.2a protein.
          Length = 928

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 441 HGT-HCHHPRASNRQGSGGVPARKSPNRLQE*DQEGCC 551
           HG   C  PR+S++      P+R +P++L    ++GCC
Sbjct: 673 HGVISCSSPRSSSKLNRSSYPSRNAPHQL----EDGCC 706


>AL022593-3|CAA18635.3|  928|Caenorhabditis elegans Hypothetical
           protein F33E2.2a protein.
          Length = 928

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 441 HGT-HCHHPRASNRQGSGGVPARKSPNRLQE*DQEGCC 551
           HG   C  PR+S++      P+R +P++L    ++GCC
Sbjct: 673 HGVISCSSPRSSSKLNRSSYPSRNAPHQL----EDGCC 706


>Z81513-2|CAB04186.2|  489|Caenorhabditis elegans Hypothetical
           protein F26D2.2 protein.
          Length = 489

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 23/98 (23%), Positives = 43/98 (43%)
 Frame = +1

Query: 268 IQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLME 447
           + SS  + QA+   + +R+D  R  L+E +  L    +  +   E  VTL  Q LFQ   
Sbjct: 179 LNSSCAMMQAKYDEMIIRQDQDREALEEGKLNLKASEEKLEQMREDCVTLRSQ-LFQFEA 237

Query: 448 PTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDVVLKV 561
                +  + +K + +     A+   +N+  K  + K+
Sbjct: 238 SRSQDKTTEIEKEIEKITAETAKVRVENEQLKASLSKI 275


>AF515833-1|AAM55225.1|  489|Caenorhabditis elegans synaptonemal
           complex protein SYP-1 protein.
          Length = 489

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 23/98 (23%), Positives = 43/98 (43%)
 Frame = +1

Query: 268 IQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLME 447
           + SS  + QA+   + +R+D  R  L+E +  L    +  +   E  VTL  Q LFQ   
Sbjct: 179 LNSSCAMMQAKYDEMIIRQDQDREALEEGKLNLKASEEKLEQMREDCVTLRSQ-LFQFEA 237

Query: 448 PTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDVVLKV 561
                +  + +K + +     A+   +N+  K  + K+
Sbjct: 238 SRSQDKTTEIEKEIEKITAETAKVRVENEQLKASLSKI 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,425,274
Number of Sequences: 27780
Number of extensions: 210638
Number of successful extensions: 651
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)