Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30590
         (833 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   2.3  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   3.0  
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    22   5.2  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   5.2  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   9.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.1  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 163 PGPTESYLRHHPNPAMRAPP 222
           P  T  Y R+HP P    PP
Sbjct: 167 PVYTHHYARYHPYPNFGVPP 186


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 10  TSIPTSVTMSLNPNFFPNGYQDPKHPEEEVVSNWPY 117
           T  PTSV   L P+  P     P  P    +++ PY
Sbjct: 312 TPTPTSVMTELYPSPVPGHSTSPNLPLTHNIAHNPY 347


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 6/17 (35%), Positives = 15/17 (88%)
 Frame = +1

Query: 292 EEAPKVLHKQFNSPINL 342
           ++APK+++ ++NS +N+
Sbjct: 13  QKAPKIVNSKYNSILNI 29


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 6/17 (35%), Positives = 15/17 (88%)
 Frame = +1

Query: 292 EEAPKVLHKQFNSPINL 342
           ++APK+++ ++NS +N+
Sbjct: 13  QKAPKIVNSKYNSILNI 29


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +3

Query: 255 KGGRVGAAASG 287
           KGG  GAAASG
Sbjct: 119 KGGGAGAAASG 129


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +1

Query: 58  PNGYQDPKHPEEEVVSNWP 114
           PN    P  PEEE  S  P
Sbjct: 39  PNSAASPAPPEEEAASPTP 57


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,252
Number of Sequences: 336
Number of extensions: 4237
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22932949
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)