Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30590
(833 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0158 + 14207463-14207629,14207724-14207774,14207874-142080... 34 0.12
05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518... 31 0.86
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 31 1.1
12_01_0111 - 857627-857975,858123-858334,858428-858550,858662-85... 29 3.5
01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833 29 3.5
09_01_0037 - 604001-604957 29 4.6
02_04_0293 + 21644415-21644533,21644686-21645118 29 4.6
11_05_0050 + 18665251-18665613,18667280-18667744,18668548-186690... 28 8.0
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 28 8.0
02_04_0435 + 22912993-22913456,22913847-22914012,22914096-229141... 28 8.0
>11_04_0158 +
14207463-14207629,14207724-14207774,14207874-14208002,
14209342-14209447,14209491-14209601,14210042-14210098,
14210903-14211727
Length = 481
Score = 34.3 bits (75), Expect = 0.12
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 37 SLNPNFFPNGYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNP 204
S +P+ FP Q P P+ + NWP P + PGA PGP + P P
Sbjct: 244 SPSPSSFPLKQQQPPPPQ---LFNWPGHAPPQLPPGASPLFPPGPAAFHPSSRPMP 296
>05_01_0578 +
5180538-5181385,5182480-5182595,5183397-5183605,
5184024-5184143,5184247-5184375,5184466-5184591,
5185550-5185667,5186471-5186680,5186788-5187100,
5187467-5187560,5187760-5187868,5188322-5188593,
5188684-5188811,5188977-5189211,5189794-5189982,
5190069-5190349,5190431-5190698,5190719-5190961,
5191598-5191680,5192484-5192493
Length = 1366
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 283 VVGEEAPKVLHKQFNSPINLYSEQNIANSIRQQTSPLPTN 402
V G++ PK L+ F L + +NI S++ SP PTN
Sbjct: 746 VTGKDCPKGLYGTFCKACPLGTYKNITGSLKSLCSPCPTN 785
>10_08_0495 -
18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +1
Query: 64 GYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPPNHDY 234
GY P+ PY P P ++P + H+ P + PPNHDY
Sbjct: 778 GYSQPEQRPAYSQPYPPYGAPPQQPPYGAPSQQPPYGAPHPGHYQQPPHQQPPNHDY 834
>12_01_0111 -
857627-857975,858123-858334,858428-858550,858662-858856,
859259-859498
Length = 372
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = +1
Query: 73 DPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPPNHDYRDTLMK 252
DP H E + + +TP +LP ++R+H P + H Y DT +
Sbjct: 200 DPVHLLEIGIEGFYGLSTPELLPVNPDEYSGHAGTDFIRNHQAPGIDLASIHVYSDTWLP 259
Query: 253 QKVAESVLQRV 285
+ E+ LQ V
Sbjct: 260 HSIKENHLQFV 270
>01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833
Length = 503
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 127 PLVLPGAKVRREPGPTESYLRHHPNPAMRAPP 222
P PG R PGP + P+P R+PP
Sbjct: 50 PSQAPGPAARHAPGPARHHGAPAPHPGRRSPP 81
>09_01_0037 - 604001-604957
Length = 318
Score = 29.1 bits (62), Expect = 4.6
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +1
Query: 22 TSVTMSLNPNFFPNGYQDPKHPEEEVVSNWPYRTTPLVLPGAK-VRREPGPTESYLRHHP 198
TS+++SL+ + + DP P E V P + + P VR+EP L+ P
Sbjct: 202 TSLSLSLSLPGLDHPHPDPSTPSEPAVQLQPPPPSQMPPPTPSCVRQEPPQMPFQLQPPP 261
Query: 199 NPAMRAPPNHDYRDTLMKQKVAESVLQRVVGEEA 300
P AP + ++ +M++ + V + G A
Sbjct: 262 PPRPSAPFSAEFL-AMMQEMIRIEVRNYMSGSAA 294
>02_04_0293 + 21644415-21644533,21644686-21645118
Length = 183
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 303 RCLFANHSLQHRLCHLLFHKGITVVVVRRCPHC 205
RC +H LQHR C L+ + V RRC C
Sbjct: 29 RCGHCHHRLQHRYCSELYPR---VAAYRRCNWC 58
>11_05_0050 +
18665251-18665613,18667280-18667744,18668548-18669037,
18669115-18669143
Length = 448
Score = 28.3 bits (60), Expect = 8.0
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Frame = +1
Query: 163 PGPTESYLRH-HPNPAMRAPPNHDYRDTLMKQKVAESVLQRVVGEEAPKVLHKQ-FNSPI 336
P P +Y+ H PNP + + P V S + G P + Q FN P
Sbjct: 136 PNPQPAYMSHPKPNPHVFSSP--------CSPVVFNSPSNHLAGSTTPTPNNLQVFNGPR 187
Query: 337 NLYSEQNIANSIRQQTSPLPTN 402
N + + +N + T+P P N
Sbjct: 188 NPHVSNSPSNHLAGSTTPTPNN 209
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 121 TTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPP 222
T PL +P P T + L +PNP+ PP
Sbjct: 25 TPPLAVPATNTPPNPATTPTPLTPNPNPSPTLPP 58
>02_04_0435 +
22912993-22913456,22913847-22914012,22914096-22914146,
22914353-22914578,22915275-22915963,22916055-22916408
Length = 649
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 160 EPGPTESYLRHHPNPAMRAPPNHD-YRDTLMKQKV 261
E G E +R H PA RAP D YR ++ +KV
Sbjct: 190 EMGIEEDIIRKHTTPAYRAPEMWDLYRREVISEKV 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,820,177
Number of Sequences: 37544
Number of extensions: 478818
Number of successful extensions: 1399
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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