Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30589
(753 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 4e-21
SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 9e-19
SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05) 78 7e-15
SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10) 70 2e-12
SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 5e-10
SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_36121| Best HMM Match : CH (HMM E-Value=0.0017) 46 4e-05
SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8) 45 8e-05
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 3e-04
SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.047
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09) 34 0.14
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 32 0.57
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05) 32 0.57
SB_15403| Best HMM Match : CH (HMM E-Value=0) 31 1.0
SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12) 31 1.3
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22) 30 1.8
SB_53975| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084) 29 3.1
SB_12330| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_33054| Best HMM Match : DEAD (HMM E-Value=0.42) 29 5.4
SB_17915| Best HMM Match : 7tm_1 (HMM E-Value=6e-30) 28 7.1
SB_45116| Best HMM Match : EGF (HMM E-Value=0) 28 9.4
SB_43170| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0) 28 9.4
SB_1834| Best HMM Match : efhand (HMM E-Value=1e-06) 28 9.4
>SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 98.7 bits (235), Expect = 4e-21
Identities = 65/170 (38%), Positives = 93/170 (54%), Gaps = 8/170 (4%)
Frame = +3
Query: 78 QEQEVLTWISDVLGEPL--PNGAYEDV---LRDGVILCKLANKLAPGSVKKIQERGTNFQ 242
+E+E WI VLGE + NG + V L+DG +LC+LAN+L G KI ++ F+
Sbjct: 432 KEEEARKWIDTVLGESIFGENGGVDTVHQTLKDGQVLCRLANRL--GGDLKINQQKMPFK 489
Query: 243 LMENIQRFQAAIKK-YGVPEEEIFQTADPFERRNIPQVTLCLYALGRITQKHPEFTGPQL 419
MENI F + I+ GV + ++FQT D +E+ N+ V C++A+GR + PQL
Sbjct: 490 QMENIGNFLSFIENNLGVAKNDLFQTVDLYEKSNMWNVICCIHAVGRRAYSLGKDV-PQL 548
Query: 420 GPKMADKNERTFTEEQLRAHNAELN-LQMG-FNKGASQSGHGGFGNTRHM 563
GPK + KN R FTE QL +N QMG K + + FG R +
Sbjct: 549 GPKESTKNPRQFTERQLNEGKTIINSFQMGPAAKNVATASGQSFGRQRQI 598
>SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 91.1 bits (216), Expect = 9e-19
Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 5/141 (3%)
Frame = +3
Query: 69 NKDQEQEVLTWISDVLGEPLPNGA-----YEDVLRDGVILCKLANKLAPGSVKKIQERGT 233
+ D + WI +LGE + G +VL+DG +LC++ANKL G++K I
Sbjct: 65 DSDLAAQATAWIEGILGERVFGGKTGADDVHEVLKDGQVLCRVANKLG-GNIK-INSSKM 122
Query: 234 NFQLMENIQRFQAAIKKYGVPEEEIFQTADPFERRNIPQVTLCLYALGRITQKHPEFTGP 413
F++MEN +F GVP+ ++FQT D +E++N+P V ++ALGR + T
Sbjct: 123 AFKMMENTGKFLEFCDTIGVPKTDMFQTVDLYEKQNMPGVINGIHALGRKAHSTGK-TCL 181
Query: 414 QLGPKMADKNERTFTEEQLRA 476
LGPK A N R FTEEQ RA
Sbjct: 182 ALGPKEASANPREFTEEQRRA 202
>SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05)
Length = 195
Score = 78.2 bits (184), Expect = 7e-15
Identities = 57/138 (41%), Positives = 73/138 (52%), Gaps = 5/138 (3%)
Frame = +3
Query: 78 QEQEVLTWISDVLGEPLPNGA-----YEDVLRDGVILCKLANKLAPGSVKKIQERGTNFQ 242
QE+E WI VLGE + GA + VL+DG IL +LA KL G+ K+ E+ F+
Sbjct: 26 QEEEARIWIEAVLGEKVFGGAEGPDDVQKVLKDGKILARLAIKL--GAKIKVNEQNMPFK 83
Query: 243 LMENIQRFQAAIKKYGVPEEEIFQTADPFERRNIPQVTLCLYALGRITQKHPEFTGPQLG 422
MENI F + GV + FQTAD ++ N+ T C Q + P LG
Sbjct: 84 QMENIGNFLSHCGHLGVASGDQFQTADLYDNANM---TSC--------QLIKDLDIPTLG 132
Query: 423 PKMADKNERTFTEEQLRA 476
PK A+ N R FTEEQLRA
Sbjct: 133 PKEAEANVREFTEEQLRA 150
>SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)
Length = 172
Score = 69.7 bits (163), Expect = 2e-12
Identities = 31/72 (43%), Positives = 47/72 (65%)
Frame = +3
Query: 141 YEDVLRDGVILCKLANKLAPGSVKKIQERGTNFQLMENIQRFQAAIKKYGVPEEEIFQTA 320
+++ L+ GV+LCKLAN + PG++KKI NF +MENI+ F ++ GV + F T
Sbjct: 90 FQNTLKSGVVLCKLANAIQPGAIKKINNAKMNFMMMENIENFCNFVQTKGVASQYQFVTI 149
Query: 321 DPFERRNIPQVT 356
D FE +N+ QV+
Sbjct: 150 DLFEGKNMHQVS 161
>SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 62.1 bits (144), Expect = 5e-10
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +3
Query: 129 PNGAYEDVLRDGVILCKLANKLAPGSVKKIQERGTNFQLMENIQRFQAAIKK-YGVPEEE 305
P + + LR GVILCK+ANK+ ++ KI E +F + ENI +F ++ G+
Sbjct: 301 PGETFAEPLRSGVILCKIANKIKSNAIPKIGESNKSFVMQENISKFLDFCERVLGLDRLN 360
Query: 306 IFQTADPFERRNIPQV 353
+FQT D FER+N+ V
Sbjct: 361 LFQTVDLFERQNVGMV 376
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Frame = +3
Query: 186 NKLAPGSVKKIQE----RGTNFQLMENIQRFQAAI--KKYGVPEEEIFQTADPFERRNIP 347
N++ PG++ KI R FQ++ENI++F A + + ++F D +E+ N+
Sbjct: 205 NEVFPGAISKIHGINGGRFHGFQILENIEKFLKACQGEPFNCNVVDLFSPGDLYEKNNVG 264
Query: 348 QV 353
QV
Sbjct: 265 QV 266
>SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +3
Query: 183 ANKLAPGSVKK--IQERGTNFQLMENIQRFQAAIKKYGVPEEEIFQTADPFERRNI 344
AN + PG +KK + F++MENI F IK YGV EE IF T D +E+RN+
Sbjct: 188 ANAIQPGVIKKPHLNPGKMGFKMMENIGWFVNFIKSYGVQEEYIFVTVDLYEKRNV 243
>SB_36121| Best HMM Match : CH (HMM E-Value=0.0017)
Length = 209
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/79 (30%), Positives = 40/79 (50%)
Frame = +3
Query: 87 EVLTWISDVLGEPLPNGAYEDVLRDGVILCKLANKLAPGSVKKIQERGTNFQLMENIQRF 266
E WI P N + + L DGV+LC+L +A SV +I ++GT +N+ F
Sbjct: 32 EARRWIERATFTPFKNDDFRESLADGVLLCELIVNVANISVGRINKQGTAHAGRDNLSVF 91
Query: 267 QAAIKKYGVPEEEIFQTAD 323
A + G+ + ++F+ D
Sbjct: 92 FRACEALGLDKYQLFEHED 110
>SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8)
Length = 89
Score = 44.8 bits (101), Expect = 8e-05
Identities = 29/77 (37%), Positives = 41/77 (53%)
Frame = +3
Query: 246 MENIQRFQAAIKKYGVPEEEIFQTADPFERRNIPQVTLCLYALGRITQKHPEFTGPQLGP 425
MENI F + GV + ++FQT D +E++N+ A G PQLGP
Sbjct: 18 MENIGNFLLFCESLGVSKVDLFQTVDLYEKQNMAAAR----AKG--------LNCPQLGP 65
Query: 426 KMADKNERTFTEEQLRA 476
K A+ N R+F E++LRA
Sbjct: 66 KEAEANPRSFDEDKLRA 82
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 35.5 bits (78), Expect(2) = 3e-04
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 225 RGTNFQLMENIQRFQAAIKK--YGVPEEEIFQTADPFERRNIPQVTLCLYALGRITQKH 395
+ T+ + ENI F A ++ + +++FQT FER+N+ QV + A R +KH
Sbjct: 891 KSTSLGMQENIANFLNACQEEPFNCNPQDLFQTVYLFERQNLGQVISGIQAFARKVRKH 949
Score = 26.6 bits (56), Expect(2) = 3e-04
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 405 TGPQLGPKMADKNERTFTEE 464
T P GPK A+KN R F E+
Sbjct: 984 TVPLFGPKEAEKNPRNFPEQ 1003
>SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 41.1 bits (92), Expect = 0.001
Identities = 30/125 (24%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Frame = +3
Query: 153 LRDGVILCKLANKLAPGSVKKI--QERGTNFQLMENIQRF-QAAIKKYGVPEEEIFQTAD 323
LRDGV+LC++AN L PG+V + + + + F ++NI+ F A + + + + ++F +
Sbjct: 55 LRDGVLLCQVANVLHPGAVVDVGMKPQMSQFMCLKNIRNFLTACTRLFNLADGDLFDANE 114
Query: 324 PFERRNIPQVTLCLYALGRITQKHPEFTGPQLGPKMADKNE-RTFTEEQLRAHNAELNLQ 500
++ + +V L L + PE P + N+ + +E + ++ E+ L
Sbjct: 115 LYDVSDFGKVVNTLSKLSHL----PESLHRGFEPFPPNTNKFAAYQDEDIYSNLEEIALS 170
Query: 501 MGFNK 515
G +
Sbjct: 171 SGITQ 175
>SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = +3
Query: 153 LRDGVILCKLANKLAPGSVKKIQ------ERGTNFQLMENIQRFQAAIKKYGVPEEEIFQ 314
L DGV+LC L N G++ I + T + M+N+ F A KK GV E +
Sbjct: 336 LADGVVLCHLVNSAYKGTIPSIHIPSAGVPKLTMTKCMKNVDYFLEACKKLGVDRELLCS 395
Query: 315 TADPFERRNIPQVTLCLYAL 374
+AD + ++ +V + AL
Sbjct: 396 SADILQEKSPQRVCATVQAL 415
>SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 37
Score = 35.5 bits (78), Expect = 0.047
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +3
Query: 411 PQLGPKMADKNERTFTEEQLRA 476
P LGPK A+ N R FTEEQLRA
Sbjct: 10 PTLGPKEAEANVREFTEEQLRA 31
>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
Length = 959
Score = 33.9 bits (74), Expect = 0.14
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 23/123 (18%)
Frame = +3
Query: 81 EQEVLTWISDVLGEP-LPNGAYEDVLRDGVILCKLAN-------------------KLAP 200
++++ +WIS +LGE L + +L GV+LC+LAN L P
Sbjct: 29 KEDLASWISRLLGEEELNTDTFTSMLDTGVVLCRLANFIQTVGEEFFVRNPKFPRRGLFP 88
Query: 201 GSVKKIQERGT---NFQLMENIQRFQAAIKKYGVPEEEIFQTADPFERRNIPQVTLCLYA 371
++RG +F +N+ F ++ VP+ +F+T D +N V L L
Sbjct: 89 ACGVTYKQRGATHGSFVARDNVSNFIRWCRELRVPDVIMFETEDLVLNKNEKTVLLTLLE 148
Query: 372 LGR 380
+ R
Sbjct: 149 VAR 151
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 31.9 bits (69), Expect = 0.57
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -3
Query: 238 KLVPLSWIFFTDPGANLLANLQRITPSLSTSSYAPFGSGSPKTSEIQVRTSCSWSLF 68
K+VP SW ++ L PS++ + P G GS + + +R S SW+ F
Sbjct: 6989 KIVPKSW----HSHMSMRVELYGCYPSMTRLCFKPLGVGSRRLPDANLRASSSWNRF 7041
>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
Length = 819
Score = 31.9 bits (69), Expect = 0.57
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 246 MENIQRFQAAIKKYGVPEEEIFQTADPFERRNIPQV 353
M I +F +GV + ++FQT D +E++NI QV
Sbjct: 700 MVTIAKFLDFCGTFGVAKSDLFQTVDLYEKQNIQQV 735
>SB_15403| Best HMM Match : CH (HMM E-Value=0)
Length = 1907
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 12/64 (18%)
Frame = +3
Query: 54 TMPARNKDQEQEVLTWISDVLGEP------LPNGAYEDV------LRDGVILCKLANKLA 197
T + +K+++ WI+ L E LP A ED ++DG++LCK+ N A
Sbjct: 38 TKHSHSKEEQVAFADWINSSLKEDESVHKYLPIDASEDSSDLYEKVKDGILLCKMINLSA 97
Query: 198 PGSV 209
PG++
Sbjct: 98 PGTI 101
>SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)
Length = 906
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 81 EQEVLTWISDVLGEPLPNGAYEDVLRDGVILCKLANKLAPGSVKKIQ 221
++++ W+S VL + + D L +GV+LCKLA + + + I+
Sbjct: 38 KEDLAEWLSRVLEVEVQADNFMDYLDNGVLLCKLAQLIQKAATEWIK 84
>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
Length = 820
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 156 RDGVILCKLANKLAPGSV--KKIQERGTNFQLMENIQRFQAAIKKYGVP 296
RDG+ +C+L N L PG + K +E+ TN + I Q A +G+P
Sbjct: 454 RDGMAICELVNALQPGLIPDSKYKEK-TNSEATAKI-GIQTAHDAFGIP 500
>SB_53975| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 43
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 81 EQEVLTWISDVLGEPLPNG--AYEDVLRDGVIL 173
+ E + WI VLGE + G EDVL+DG IL
Sbjct: 10 DAEAVDWIEKVLGEKVCQGKSINEDVLKDGQIL 42
>SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 232 PTSSSWRTFKGSKRQSRNTEYQKKKYSKPPILLRGVTFPK*HYVCTLWE 378
P + ++T + R E+Q+K+Y LL+G TF + LW+
Sbjct: 51 PNTEKYKTEEALNRSRAYLEFQRKRYGNLYQLLKGNTFTDAEDLVKLWD 99
>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
Length = 2086
Score = 29.5 bits (63), Expect = 3.1
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 24/113 (21%)
Frame = +3
Query: 153 LRDGVILCKLANKL--------------APGSVKKIQE--RGTN----FQLMENIQRFQA 272
L DG +LCKLAN + PG K +E RG F EN+Q+F
Sbjct: 697 LEDGTLLCKLANYIQEMADTYGQKHNTHVPGKKIKFKESKRGHRESKLFHSRENVQKFLT 756
Query: 273 AIKKYGVPEEEIFQTADPFE----RRNIPQVTLCLYALGRITQKHPEFTGPQL 419
+ + +PE +F++ D R ++ +CL + R K+ P+L
Sbjct: 757 WCRWHDIPEAILFESNDVVLVDECRTGGREIVICLMEIARRVIKYEIKQVPKL 809
>SB_12330| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 192 LAPGSVKKIQERGTNFQLMENIQRFQAAIKKYGVPEEEIFQTADPFERRN 341
+AP +V +ERG + +++N+Q+ Q + G P P +R+N
Sbjct: 122 VAPIAVGLTEERGDSISVIQNLQQVQQQLHGSGEPVPVNLADMTPAQRKN 171
>SB_33054| Best HMM Match : DEAD (HMM E-Value=0.42)
Length = 1088
Score = 28.7 bits (61), Expect = 5.4
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Frame = +3
Query: 117 GEPLPNGAYEDVLRDGVILCKLANKLAPGSVKK---IQERGTNFQLMENIQRFQAAIKKY 287
GEP P+ + RDG + C L +L SV I ++ T + + ++ F +
Sbjct: 328 GEPGPHARACGIQRDGQLCCHLRGRLPEESVHSAFFIDDKETT-KRAKVLETFDEKLAPT 386
Query: 288 GVPEEEIFQTADPFERRNIPQVTL-CLYALGRITQKHPEF 404
G +E++F+ E + + L C+ ++ R Q F
Sbjct: 387 GCTKEDLFRLERKLEIKLVAVDALACMGSIPRPKQSCKNF 426
>SB_17915| Best HMM Match : 7tm_1 (HMM E-Value=6e-30)
Length = 387
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 588 IFSTLISVFVNGRIWLNDFFTFKIILPITLCQRSCDRFYLIYFKY*STAFGTLIF 752
I S ++ F++ I L K +L QRSCD F ++ + + + + T+ F
Sbjct: 61 ILSLSLADFLDSGIALQMVVFIKYLLRFPWTQRSCDSFIVLLYTFRTASASTVTF 115
>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
Length = 2023
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 469 FGPTTLNLTSKWASIRAPPSPVMVASVTPATCK 567
FG TL W SI+A P V++ PA C+
Sbjct: 1728 FGDVTLPSAVDWRSIQAQPISGPVSTTCPAKCQ 1760
>SB_43170| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -3
Query: 313 WNISSSGTPYFL--IAAWNL*MFSMSWKLVPL-SW 218
WN GTPYF+ +WNL + + L PL SW
Sbjct: 29 WNPVLHGTPYFMGPRTSWNLVLHGTPYFLEPLTSW 63
>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 1997
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 351 VTLCLYALGRITQKHPEFTGPQLGPKMADKNERTFTEEQLRAHNAELNL 497
+ + L R+TQK P G +L ++ D NER +EQ A A++ L
Sbjct: 1153 IRVSLDVASRVTQKIPNEQGKELEHELDDLNER--LDEQGGATQAQMEL 1199
>SB_1834| Best HMM Match : efhand (HMM E-Value=1e-06)
Length = 659
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 231 TNFQLMENIQRFQAAIKKYGVPEEEIFQTADPFERRNI--PQVTLCLYALGRITQKHPEF 404
++ L E IQR + + + EE FQ DP +I Q CL ++G+ H +F
Sbjct: 242 SSVDLDELIQRIRHHVLVKRLRVEEFFQDFDPLRHGSISVSQFRQCLNSMGQTDLTHAQF 301
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,829,599
Number of Sequences: 59808
Number of extensions: 591963
Number of successful extensions: 4657
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 4531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4649
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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