Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30588
(694 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 30 0.28
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 30 0.36
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 29 0.64
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 29 0.64
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 29 0.84
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 28 1.1
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 1.5
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 27 1.9
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 27 1.9
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.6
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.6
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ... 27 2.6
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 3.4
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 26 4.5
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 26 4.5
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 26 4.5
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 26 5.9
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 26 5.9
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 5.9
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 7.9
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 30.3 bits (65), Expect = 0.28
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 510 PTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDW 659
PT KK + ++ K + ++ +E N + VK + L+ ++EK P W
Sbjct: 531 PTAKKNNSFKPKLFRRSRELSEKLCNNWSERVKSPSYQLKVREREKLPAW 580
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 29.9 bits (64), Expect = 0.36
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +3
Query: 324 GKPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDL 491
G ID++ +++KR Y ++ ++ LE ++R + EISD +++ L
Sbjct: 837 GSDNRIDESELNSVKRSLLKYENKLQIIKSSSSGLEEQMQRINSEISDKRNELESL 892
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 29.1 bits (62), Expect = 0.64
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 579 NFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQ 683
+FRNQ+K ++ L E+ KE W +G DQ
Sbjct: 1070 DFRNQIKSQTERILVLREKKKEDPISWMEGTMEDQ 1104
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 29.1 bits (62), Expect = 0.64
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 384 YHERIARLEDEKFDLEYIVKRKDMEISDLNS---QVNDLRGKFVKPTLKKVSKYENKFAK 554
+H+ + +DE Y++ K ME +L+ QVN + K +K VS + N +A+
Sbjct: 578 FHQLVFSADDEYLASVYLIYLKQMETKNLSEEKPQVNKIVKKILKKYDSSVSVW-NTYAQ 636
Query: 555 LQKKAAEF 578
L+ + F
Sbjct: 637 LEHLSGAF 644
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 28.7 bits (61), Expect = 0.84
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 537 ENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQK 686
+N F K E NF + +K K +FT E+K + K P +QK
Sbjct: 254 DNFFRDFLKVCDECNFNHNIKEFSKCDFTQMFHHFEQKREEKKSMPKEQK 303
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +3
Query: 366 KRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYE 539
+R+C+ + + + + +DL++ E S L+ QVNDL + K T +K+S+ +
Sbjct: 897 QRLCEGRTKELLNSQQKLYDLKHSYSSVMTEKSKLSDQVNDLTEQ-AKITQRKLSEVQ 953
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 477 QVNDLRGKFVKPTLKKVSK-YENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKP 653
Q N +RG+ + + K+ K Y+N+ ++K + +++ + + + P
Sbjct: 418 QGNFVRGQKLHLEISKIQKKYQNQIENMKKGSHVTKSNQYSEMIGNLPYPTSSRKRTRSP 477
Query: 654 DWSKGKPGDQK 686
SKGK D+K
Sbjct: 478 LMSKGKSYDRK 488
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 525 VSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEE-DKEKK 650
+ K +NK + Q+ + +N+ K+ ++KE EEE D EKK
Sbjct: 1 MGKIKNKIVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKK 43
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 333 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKD 452
+NI D++ED I ++ Y + A DE+ E+ + KD
Sbjct: 435 ENIVDSSEDIINQIASQYMDDRAFETDEEESTEFQITTKD 474
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 27.1 bits (57), Expect = 2.6
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = +3
Query: 405 LEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLK-KVSKYENKFAKLQKK-AAEF 578
LE + L + ++KD +I +L ++NDL + TLK E K + K+ AA
Sbjct: 149 LEKQVKTLHDLNEQKDKKIKELKERINDLTYDY--ETLKANADDSEGKQTLVSKREAALE 206
Query: 579 NFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGD 680
F+++L ++++ E E K D K + D
Sbjct: 207 EFQSKL-LIRENEINKRELKMNGKEDDLKKREKD 239
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 441 KRKDMEISDLNSQVNDLRGKFVKPTLKK-VSKYENKFAKLQKKAAEFNFRNQLKVVKKKE 617
K+ D I+ S + G+ + P L + + +E++F Q+ AE+ + Q + + +
Sbjct: 1368 KQTDTGITHFRSGMTT-NGEHLIPNLYRYIQPWESEFIDSQRVWAEYAMKRQEALQQNRR 1426
Query: 618 FTLEEEDKEKKPDWSKGKP 674
TLE + + W +G P
Sbjct: 1427 LTLE----DLEDSWDRGIP 1441
>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 27.1 bits (57), Expect = 2.6
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 9/127 (7%)
Frame = +3
Query: 339 IDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRK-DMEISDLNSQVNDLRGKFVKPT 515
ID A E ++R + E +A++E E+ ++ +R D I + LR K K T
Sbjct: 42 IDPALERRLERKRMEAEEELAKIETEEEGGDFERRRAWDWTIEESEKWDQRLRKK--KQT 99
Query: 516 LKKV--SKYENKFAK-----LQKKAAEFN-FRNQLKVVKKKEFTLEEEDKEKKPDWSKGK 671
++ V S Y ++ +K ++ ++ + K K K ++ D+ ++ DW K
Sbjct: 100 IQNVAFSDYHSQASKDYNRGIRDLKPDYEKYDKDKKEEKSKSRSVALYDEAERLDWVSNK 159
Query: 672 PGDQKVK 692
P + V+
Sbjct: 160 PDKEHVE 166
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.6 bits (56), Expect = 3.4
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +3
Query: 444 RKDMEISDLNSQVNDLRGKFVKPTLKKVS-KYENKFAKLQKKAAEFNFRNQLKVVKKKEF 620
R ++E +L QVN+L+G V P S ++ N ++ KA ++Q+ K K F
Sbjct: 1423 RLNLEKHNLEKQVNELKGAEVSPQPTGQSLQHVNLAHAIELKA----LKDQINSEKAKMF 1478
Query: 621 TLEEEDKEKKPDWSKGKPGDQKV 689
+++ + ++++ + K +KV
Sbjct: 1479 SVQVQYEKREQELQKRIASLEKV 1501
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 561 KKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQ 683
KK + R +++ K ++DK KP+ GKP D+
Sbjct: 22 KKPLPLHMRTKIREHLNKSDPTVKDDKSAKPELPFGKPADR 62
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -2
Query: 687 PSDLPACPSTSQAFSLCLPLPR*IPSFSRPSI 592
PS LP PSTS +F +PL PSFS +I
Sbjct: 150 PSQLPVRPSTSLSFFDDIPLG---PSFSAETI 178
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 202 KPFFAFLALEASSMRLRTSARLRSISACL 116
K FF L E+ +RL+T+ + S+ CL
Sbjct: 325 KAFFTLLESESMEIRLQTATTICSVIGCL 353
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 354 EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVN 485
ED+ + D+H A E+EK + K ME+ ++N V+
Sbjct: 23 EDSNRGTITDFHIETANNEEEKDANVILNKSVKMEVEEVNGHVD 66
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 431 FQIEFFIFKTSDAFMVVFANPLNSIFVGVVNVLRFTAPLLD 309
+ +++ + K + M V +PL S F+ +N LRF + D
Sbjct: 781 YLLKYSLGKGAKTLMFVNVSPLKSQFMDTLNSLRFATKVND 821
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 384 YHERIARLEDEKFDLEYIVKRKDMEISDLNSQV 482
+HE I +L+D + +L +++K++ IS L V
Sbjct: 599 FHESINKLQDREKELTSNLEKKNLVISSLRETV 631
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 7.9
Identities = 19/92 (20%), Positives = 36/92 (39%)
Frame = +3
Query: 363 IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYEN 542
+K + H ++ E + E K I + + ++ + K VK ++ + +
Sbjct: 376 LKESNRTIHSQLTDAESKLSSFEQENKSLKGSIDEYQNNLSS-KDKMVKQVSSQLEEARS 434
Query: 543 KFAKLQKKAAEFNFRNQLKVVKKKEFTLEEED 638
A K AE N + K K+F E+D
Sbjct: 435 SLAHATGKLAEINSERDFQNKKIKDFEKIEQD 466
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,740
Number of Sequences: 5004
Number of extensions: 35341
Number of successful extensions: 200
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -