Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30587
(732 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 29 0.52
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 29 0.52
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 29 0.90
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 28 1.2
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 28 1.6
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.1
SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar... 27 2.8
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 26 4.8
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 4.8
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 26 6.4
SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos... 26 6.4
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 29.5 bits (63), Expect = 0.52
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +3
Query: 441 SSKTLQEKSIWVTGFNGTLLEISTV-----ADDIANGDDFTKQACVPWMGRHYYYKMSAE 605
S +L ++ + T + T+ E+S++ AD+I FT +P +G +Y + E
Sbjct: 684 SGMSLDDQELLSTTVS-TIAELSSLQGYDTADEIVQAKAFTSPRVIPGIGSRFYAQPEEE 742
Query: 606 TECKADTLLPWF 641
+ D +LP +
Sbjct: 743 FQTTMDDILPCY 754
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 29.5 bits (63), Expect = 0.52
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 301 KIMSVTSSTGKETCNPTTYSVSSK-NPHKMRSSEQYKASEGRGSPSA 164
K+ SSTG+E P+T + S++ + H R S+Q A G+ SA
Sbjct: 483 KVARKPSSTGQEPTTPSTPAKSAQSSKHARRPSKQASAPSSPGTTSA 529
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 28.7 bits (61), Expect = 0.90
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 96 DFFYEIPRSLEEVKSQGWVLTDKADGLPLPSL--ALYCSEDRILCGF 230
D F ++ S+ + + L+ K +PLP A++C D ++C F
Sbjct: 800 DIFQDVFPSMPDFRGGDRGLSHKHQNIPLPKTCAAIFCGNDELVCFF 846
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 28.3 bits (60), Expect = 1.2
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Frame = +3
Query: 231 FDETEYVVGLQVSLPVDEVTDIIF----DMPTQGFTIWETEVDGKLKKFYSIQQYFINED 398
FD+ E VV L SL V+ T I+ + F W + + Y+I+Q + + D
Sbjct: 913 FDDLE-VVELGRSLAVELGTRIVSSDRDNFVLPAFGNWTPDTSSEFMAEYTIRQRYSHVD 971
Query: 399 TLKQSVEDRLSKWDSSKTLQEKSIWVTGFNGTLLEISTVADDIANGDDFTKQ 554
++E +S L EKS F L + ++ DDI G+ + Q
Sbjct: 972 NSILNIEGDMSTDRIDLILNEKS---KLFETHLAALKSLEDDILQGNTVSPQ 1020
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -1
Query: 258 IPPHIRFRQKIRIRCGLQNNTRRAKEEEVRQLC 160
+PP I Q + + CG+ N T + E+ C
Sbjct: 492 LPPAIALVQSVVVPCGITNKTTDQERNEIEGFC 524
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 2.1
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = -3
Query: 289 VTSSTGKETCNPTTYSVSSKNPHKMRSSEQYKASEGRGSPSALSVKTQP*DLTSSSDLGI 110
+TSSTG T P T S + + SS +S S +AL+ T +TSSS L
Sbjct: 936 ITSSTGLNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTST---PITSSSVLNS 992
Query: 109 S 107
S
Sbjct: 993 S 993
>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +3
Query: 192 ALYCSEDRILCGFFDETEYVVGLQVSLPVDEVTDIIFDMPTQGFTI 329
A+Y +E ++L E Y+ + E+ II D+P F +
Sbjct: 108 AIYVAEKKLLDALNIEVVYITAQEADYSASELKSIISDIPRDEFAL 153
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 26.2 bits (55), Expect = 4.8
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 6/113 (5%)
Frame = +3
Query: 219 LCGFFDETEYVVGLQVSLPVDEVTDII-FDMPTQGFTIWETEVDGKLKKFYSIQQYFINE 395
L G E +Y+V VSLP+ +T ++ F + Q + E+ + Q +
Sbjct: 217 LAGERPERDYLVSAPVSLPLVGLTQLVHFSVTAQILGLNPGELASRFSAASGHSQGIVVA 276
Query: 396 DTLKQSVEDRLSKWDSSKTLQEKSIWV-----TGFNGTLLEISTVADDIANGD 539
+ S D S +++K W+ F T L S VAD +A+ +
Sbjct: 277 AAVSAST-DSASFMENAKVALTTLFWIGVRSQQTFPTTTLPPSVVADSLASSE 328
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 492 TLLEISTVADDIANGDDFTKQACVPWMGRHYYYKMSAETECKA-DTLLPWFPDC 650
T++E S+ D I + F C P R + Y S+ T C+ D + WF C
Sbjct: 1908 TMMESSSFMDSIIS---FIDSTCFPSSSRWFQYAPSS-TACQMFDCFMCWFFGC 1957
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 289 VTSSTGKETCNPTTYSVSSKNPHKMRSSEQYKASE 185
+ SST K + NPTT S +N ++ ++ E + S+
Sbjct: 507 IESSTNKISENPTTLSSKVENKNEPKTGENKEPSQ 541
>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 234 QKIRIRCGLQNNTRRAKEEEVRQLCRLKPSPET 136
Q+I IR GL+N + +K V L R++ PET
Sbjct: 61 QEIFIR-GLENKGKLSKTSLVEALARVRAKPET 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,355,964
Number of Sequences: 5004
Number of extensions: 76294
Number of successful extensions: 220
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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