Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30587
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0126 - 18391879-18391937,18392021-18392102,18392508-183926...    30   1.6  
01_01_0093 + 727977-729854,729877-729930                               29   2.9  
01_03_0145 - 13116302-13116958,13117365-13117430,13117786-131180...    28   8.8  

>01_05_0126 -
           18391879-18391937,18392021-18392102,18392508-18392667,
           18392739-18392807,18392850-18392992,18393069-18393203,
           18393283-18393341,18394090-18394187,18394347-18394510,
           18394586-18394647,18394803-18394977,18396331-18396588,
           18396694-18396841,18398458-18398813
          Length = 655

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 372 IQQYFINEDTLKQSVEDRLSKWD--SSKTLQEKSIWVTGFNGTLLEISTVADDIANGDDF 545
           I  Y IN         +R SK D  SS+ + E  + V   +G  L ++  +DD ANG ++
Sbjct: 476 INHYSINNMEFHHVHSERTSKEDKHSSRFISEDLVHVPKIDGVSLGLTACSDDKANGWNY 535

Query: 546 TKQ 554
             Q
Sbjct: 536 GMQ 538


>01_01_0093 + 727977-729854,729877-729930
          Length = 643

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
 Frame = -3

Query: 283 SSTGKETCNPTTYSVSSKN--PHKMRSSEQYKASEGRGSPSALS---VKTQP*DLTSSSD 119
           +  G  TC PTTYS+      P     S    +S G   PS  +   +   P DLTSSS 
Sbjct: 195 TGNGTNTCEPTTYSLPFVRMCPDAYSYSRNDASSPGFTCPSGTNYQIIFCPPIDLTSSSP 254

Query: 118 LGIS 107
             I+
Sbjct: 255 ASIA 258


>01_03_0145 -
           13116302-13116958,13117365-13117430,13117786-13118065,
           13118283-13119028
          Length = 582

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 466 PFG*PASMVPFLKYPPLLMILLTEMISLSKPVFLGWGVII 585
           P+G P   +P  K+PPL+ I + +   + KP+ L    II
Sbjct: 381 PYGLPLPHLPLTKFPPLVCIAVAQ--GVFKPLLLATQPII 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,437,677
Number of Sequences: 37544
Number of extensions: 481046
Number of successful extensions: 1380
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)