Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30587
         (732 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43990| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.96 
SB_23841| Best HMM Match : LRR_1 (HMM E-Value=1e-09)                   31   0.96 
SB_44729| Best HMM Match : SET (HMM E-Value=0)                         30   2.2  
SB_10531| Best HMM Match : SET (HMM E-Value=0)                         30   2.2  
SB_33020| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_18192| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_7350| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_7148| Best HMM Match : MoCF_biosynth (HMM E-Value=3.6e-26)          29   5.1  
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_57494| Best HMM Match : DUF1213 (HMM E-Value=5.7)                   28   9.0  
SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2)                      28   9.0  
SB_33338| Best HMM Match : Ank (HMM E-Value=2.4e-22)                   28   9.0  
SB_23339| Best HMM Match : I-set (HMM E-Value=1.3e-07)                 28   9.0  

>SB_43990| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = -3

Query: 301 KIMSVTSSTGKETCNPTTYSVSSKNPHKMRSSEQYKASEGRGSPSALSVKTQP*DLTSSS 122
           ++MS ++ T   + +  T   SS NP ++ SS  +       +P+ ++  + P  +TSSS
Sbjct: 106 QVMSSSNPTQVTSSSNPTQVTSSSNPTQVTSSSNHTQVTSSSNPTQVTSSSNPTQVTSSS 165

Query: 121 D 119
           +
Sbjct: 166 N 166


>SB_23841| Best HMM Match : LRR_1 (HMM E-Value=1e-09)
          Length = 391

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 99  NPFLDQGLHPMLSAVHLSTHRSLPQLTIVQLP 4
           NPFL QG   +LSAVH + + ++ +L    +P
Sbjct: 320 NPFLSQGAQDILSAVHQNPNSAIEELGFDDIP 351


>SB_44729| Best HMM Match : SET (HMM E-Value=0)
          Length = 1112

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 356 KFPVHFCFPYCKTLGWHIKNNVRDLIYG*RNLQSHHIFGF 237
           +F  H C+P C+T  W +   VR  ++  R+++S     F
Sbjct: 873 RFMNHSCYPNCETQKWTVNGEVRVGLFTSRDVESQEELTF 912


>SB_10531| Best HMM Match : SET (HMM E-Value=0)
          Length = 287

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 356 KFPVHFCFPYCKTLGWHIKNNVRDLIYG*RNLQSHHIFGF 237
           +F  H C+P C+T  W +   VR  ++  R+++S     F
Sbjct: 240 RFMNHSCYPNCETQKWTVNGEVRVGLFTSRDVESQEELTF 279


>SB_33020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 346 STSVSHIVKPWVGISKIMSVTSSTGKETCNPTTYS 242
           S+  + I  PW  +S  ++ T+     TC  +TYS
Sbjct: 432 SSRSTRITTPWASLSSAVTYTADVRARTCTGSTYS 466


>SB_18192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = +3

Query: 468 IWVTGFNG----TLLEISTVADDIANGDDFTKQACVPWMGRHYYYKMSAETECKADTLLP 635
           +W+   NG      +EI    D+  N   + +  CV  MG HY+Y +S   +C  D  LP
Sbjct: 152 LWLQMKNGGEKPKFMEIPLNVDEFRN-TPWVEGECVRAMGVHYHYNISKTFDC--DYALP 208

Query: 636 WF 641
            F
Sbjct: 209 VF 210


>SB_7350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = +3

Query: 468 IWVTGFNG----TLLEISTVADDIANGDDFTKQACVPWMGRHYYYKMSAETECKADTLLP 635
           +W+   NG      +EI    D+  N   + +  CV  MG HY+Y +S   +C  D  LP
Sbjct: 35  LWLQMKNGGEKPKFMEIPLNVDEFRN-TPWVEGECVRAMGVHYHYNISKTFDC--DYALP 91

Query: 636 WF 641
            F
Sbjct: 92  VF 93


>SB_7148| Best HMM Match : MoCF_biosynth (HMM E-Value=3.6e-26)
          Length = 501

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 392 IDEVLLDTVEFFKFPVHF-CFPYCKTLGWHIKNNV 291
           +  +L + V+ FK  V    +P C   GWH+K NV
Sbjct: 198 VAHILDNVVQRFKESVSIGSYPECTNAGWHVKLNV 232


>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2532

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -3

Query: 553  CLVKSSPLAISSATVDISRRVPLKPVTQMDFS*RVLELSHLLKRSST 413
            CL +   +  SS   ++ +R+P +    +D S  ++ LSHLL R S+
Sbjct: 2067 CLAECEDIE-SSWLQEVYQRLPCRVAADVDHSSTLIGLSHLLSRDSS 2112


>SB_57494| Best HMM Match : DUF1213 (HMM E-Value=5.7)
          Length = 159

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = -3

Query: 304 SKIMSVTSSTGKETCNPTTYSVSSKNPHKMRSSEQYKASEGRGSPSALSVK--TQP-*DL 134
           + ++S   ST KET   T+Y   S +P K     Q   ++G G  S+ ++K  T P  D 
Sbjct: 34  TNLLSSPKST-KETREITSYFAKSPSPVKHDERSQTTITQGEGKTSSTALKYPTDPEKDA 92

Query: 133 TSSSDLG 113
            SS   G
Sbjct: 93  KSSKSTG 99


>SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2)
          Length = 2527

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/72 (22%), Positives = 29/72 (40%)
 Frame = +3

Query: 369  SIQQYFINEDTLKQSVEDRLSKWDSSKTLQEKSIWVTGFNGTLLEISTVADDIANGDDFT 548
            ++  Y+ N  TL+  +   ++ W ++ TL+   I V  +      +  V  D    DD  
Sbjct: 1073 TVVAYWSNASTLEHVITTVVAYWSNASTLEHVIITVVAYWSNATTLQHVCTDDTASDDMD 1132

Query: 549  KQACVPWMGRHY 584
              A  P   R +
Sbjct: 1133 GDADHPRREREH 1144


>SB_33338| Best HMM Match : Ank (HMM E-Value=2.4e-22)
          Length = 215

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 250 TYSVSSKNPHKMRSSEQYKASEGRGSPSAL 161
           TY  SS   H M S   Y AS+ R  PS+L
Sbjct: 9   TYEHSSMESHAMSSQAAYAASKNRLRPSSL 38


>SB_23339| Best HMM Match : I-set (HMM E-Value=1.3e-07)
          Length = 423

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 183 PSLALYCSEDRILCGFFDETEYVVGLQVSLPVDEVTDIIFDM 308
           P  A YC+ED +     D T   +  Q S  +D+V D+I +M
Sbjct: 322 PLTARYCTEDHVEGDSDDVTLMTIKSQPSHVLDQVYDVINEM 363


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,771,280
Number of Sequences: 59808
Number of extensions: 561761
Number of successful extensions: 1585
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1572
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)