Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30587
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.9  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            23   3.9  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.8  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   9.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 184 LRSPCIVLKTASYADFLTKPNMWWDC 261
           LR P  V++  S  +F      W DC
Sbjct: 27  LRGPSFVMEPPSRVEFSNSSGAWLDC 52


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 184 LRSPCIVLKTASYADFLTKPNMWWDC 261
           LR P  V++  S  +F      W DC
Sbjct: 27  LRGPSFVMEPPSRVEFSNSSGAWLDC 52


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 116 WNLIEKIRS*TKAYTPCCPQ 57
           W+++E   S  + Y PCC +
Sbjct: 215 WDILEVPASRNEEYYPCCTE 234


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 360 KFYSIQQYFINEDTLKQSVE 419
           KF+ + ++ +  DTLK  +E
Sbjct: 67  KFFQVHEWPVGNDTLKSKME 86


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 68  CCPQSTFPRTVH 33
           CCP  T+P  V+
Sbjct: 233 CCPNDTYPMIVY 244


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -1

Query: 624 CQLCTPSPQTSCSNNDAPSKE 562
           C L TP   T+CS+  +   +
Sbjct: 7   CDLATPRTGTNCSSGSSSDSD 27


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 26  CGSERCVERWTAD 64
           CG E+   +W AD
Sbjct: 648 CGQEQAFRKWAAD 660


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,293
Number of Sequences: 438
Number of extensions: 5446
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)