Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30587
(732 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 31 1.0
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 31 1.0
At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger) fa... 28 5.6
At1g78970.2 68414.m09208 lupeol synthase (LUP1) / 2,3-oxidosqual... 28 7.3
At1g78970.1 68414.m09207 lupeol synthase (LUP1) / 2,3-oxidosqual... 28 7.3
At1g05610.1 68414.m00581 glucose-1-phosphate adenylyltransferase... 28 7.3
At5g49760.1 68418.m06163 leucine-rich repeat family protein / pr... 27 9.7
At5g15020.1 68418.m01761 paired amphipathic helix repeat-contain... 27 9.7
At4g28690.1 68417.m04099 expressed protein 27 9.7
At4g11580.1 68417.m01856 F-box family protein predicted protein,... 27 9.7
At3g52890.2 68416.m05829 protein kinase (KIPK) identical to prot... 27 9.7
At3g52890.1 68416.m05828 protein kinase (KIPK) identical to prot... 27 9.7
At1g62430.1 68414.m07043 phosphatidate cytidylyltransferase / CD... 27 9.7
At1g35560.1 68414.m04415 TCP family transcription factor, putati... 27 9.7
At1g09910.1 68414.m01115 expressed protein 27 9.7
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 380 LLDTVEFFKFPVHFCFPYCKTLGWHIKNNVRDLIYG*RNLQ 258
LL+ +F +H+C CK G I+ N R L+ R+LQ
Sbjct: 789 LLENCPHLEFILHWCQEICKAHGSSIQRNYRTLLPALRSLQ 829
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 380 LLDTVEFFKFPVHFCFPYCKTLGWHIKNNVRDLIYG*RNLQ 258
LL+ +F +H+C CK G I+ N R L+ R+LQ
Sbjct: 829 LLENCPHLEFILHWCQEICKAHGSSIQRNYRTLLPALRSLQ 869
>At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 1092
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 619 LTHCYHGFPIVESGELIATGFISLPETFQHLQ 714
LT C HGF + S I G SL + F+HL+
Sbjct: 199 LTDCLHGFLLSASIVFIFLGATSLRDYFRHLR 230
>At1g78970.2 68414.m09208 lupeol synthase (LUP1) /
2,3-oxidosqualene-triterpenoid cyclase identical to
lupeol synthase GI:1762150 from [Arabidopsis thaliana],
2,3-oxidosqualene-triterpenoid cyclase [Arabidopsis
thaliana] GI:2738027; contains Pfam profile PF00432:
Prenyltransferase and squalene oxidase repeat; contains
TIGRfam profile TIGR01787: squalene/oxidosqualene
cyclases; identical to cDNA
2,3-oxidosqualene-triterpenoid cyclase GI:2738026
Length = 757
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 396 DTLKQSVEDRLSKWDSSKTLQEKSIWVT 479
DTL+ VE L++W +K ++EK++ +T
Sbjct: 323 DTLQNFVEPLLTRWPLNKLVREKALQLT 350
>At1g78970.1 68414.m09207 lupeol synthase (LUP1) /
2,3-oxidosqualene-triterpenoid cyclase identical to
lupeol synthase GI:1762150 from [Arabidopsis thaliana],
2,3-oxidosqualene-triterpenoid cyclase [Arabidopsis
thaliana] GI:2738027; contains Pfam profile PF00432:
Prenyltransferase and squalene oxidase repeat; contains
TIGRfam profile TIGR01787: squalene/oxidosqualene
cyclases; identical to cDNA
2,3-oxidosqualene-triterpenoid cyclase GI:2738026
Length = 757
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 396 DTLKQSVEDRLSKWDSSKTLQEKSIWVT 479
DTL+ VE L++W +K ++EK++ +T
Sbjct: 323 DTLQNFVEPLLTRWPLNKLVREKALQLT 350
>At1g05610.1 68414.m00581 glucose-1-phosphate adenylyltransferase,
putative / ADP-glucose pyrophosphorylase, putative
(APS2) similar to SP|P52416 from [Vicia faba]; contains
Pfam profile PF00483: Nucleotidyl transferase; identical
to cDNA GI:31408039
Length = 476
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 78 GLGLGTDFFYEIPRSLEEVKSQGW 149
G GLG D F E+ + + ++ QGW
Sbjct: 125 GFGLGKDRFVEVIAAYQSLEDQGW 148
>At5g49760.1 68418.m06163 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 953
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 295 LFLICQPKVLQYGKQKWTGNLKNSTVSNNTSSMKIL 402
L ++ Q K +GK K +GN+ S+N S + +L
Sbjct: 189 LDMLLQTKHFHFGKNKLSGNIPKELFSSNMSLIHVL 224
>At5g15020.1 68418.m01761 paired amphipathic helix repeat-containing
protein similar to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1377
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 690 KANKTGSDQFPGFNNRETMVTMCQLCTPSPQTSCSNNDAPSKEHR 556
K + D++ G + +E ++ C+ CTPS + + PS HR
Sbjct: 475 KEKERSKDKYMGKSIQELDLSDCERCTPSYRLLPPDYPIPSVRHR 519
>At4g28690.1 68417.m04099 expressed protein
Length = 448
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 226 PHKMRSSEQYKASEGRGSPSALSVKTQP*DLTSSSDLGI 110
PH M+S +K+ G+PS V + P LT G+
Sbjct: 243 PHAMQSLPNHKSGSNNGNPSPQVVPSNPYVLTRRPSNGV 281
>At4g11580.1 68417.m01856 F-box family protein predicted protein,
Caenorhabditis elegans, PIR2:S44609 ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 333
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -3
Query: 451 VLELSHLLKRSSTLCFRVSSLMKYCWIL*NFLSFPSTSVSHIVKPW 314
++ H LKR S CF VSS+ Y +I + +VSH P+
Sbjct: 229 IVSYLHSLKRLSLRCFLVSSIAVYRFIT-GLPNLTILNVSHCKNPY 273
>At3g52890.2 68416.m05829 protein kinase (KIPK) identical to protein
kinase KIPK (KCBP-interacting protein kinase)
[Arabidopsis thaliana] gi|7716430|gb|AAF68383
Length = 934
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -3
Query: 292 SVTSSTGKETCNPTTYSVSSKNPHKMRSSEQYKASEGRGSPSALSVKTQP*DLTSSSDLG 113
S TSS + C + SVS+K H+ S E S S + D++SS++ G
Sbjct: 402 SYTSSHNPKICTDSLSSVSNKEAHQ-GSDENSSGSCNVSQSSEADIVIMKQDVSSSNNSG 460
Query: 112 I 110
I
Sbjct: 461 I 461
>At3g52890.1 68416.m05828 protein kinase (KIPK) identical to protein
kinase KIPK (KCBP-interacting protein kinase)
[Arabidopsis thaliana] gi|7716430|gb|AAF68383
Length = 934
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -3
Query: 292 SVTSSTGKETCNPTTYSVSSKNPHKMRSSEQYKASEGRGSPSALSVKTQP*DLTSSSDLG 113
S TSS + C + SVS+K H+ S E S S + D++SS++ G
Sbjct: 402 SYTSSHNPKICTDSLSSVSNKEAHQ-GSDENSSGSCNVSQSSEADIVIMKQDVSSSNNSG 460
Query: 112 I 110
I
Sbjct: 461 I 461
>At1g62430.1 68414.m07043 phosphatidate cytidylyltransferase /
CDP-diglyceride synthetase (CDS1) identical to SP|O04928
Phosphatidate cytidylyltransferase (EC 2.7.7.41)
(CDP-diglyceride synthetase) (CDP-diglyceride
pyrophosphorylase) (CDP-diacylglycerol synthase) (CDS)
(CTP:phosphatidate cytidylyltransferase) (CDP-DAG
synthase) (CDP-DG synthetase) {Arabidopsis thaliana}
Length = 421
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = -2
Query: 356 KFPVHFCFPYCKTLGWHIKNNVRDLIYG 273
K P C PY K L WH +YG
Sbjct: 95 KAPEDKCLPYIKQLNWHFFFTAMLFVYG 122
>At1g35560.1 68414.m04415 TCP family transcription factor, putative
similar to PCF2 (GI:2580440) and PCF1 (GI:2580438)
[Oryza sativa]
Length = 341
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = -3
Query: 346 STSVSHIVKPWVGISKIMSVTSSTGKETCNPTTYSVSSKNPHKMRSSEQYKASEGRG 176
+T +H+V IS +S+T++ T TT ++K P K S +++ +GRG
Sbjct: 13 TTGSAHLVPSMGPISGSVSLTTTAPNST---TTTVTAAKTPAKRPSKDRHIKVDGRG 66
>At1g09910.1 68414.m01115 expressed protein
Length = 675
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 282 EVTDIIFDMPTQGFTIWETEV-DGKLKKFY 368
E+ DI+++ P G T+WE + D K +F+
Sbjct: 469 EMGDIVYEPPRDGPTLWEIGIPDRKASEFF 498
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,621,363
Number of Sequences: 28952
Number of extensions: 401329
Number of successful extensions: 1212
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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