Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30586
(706 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein. 29 4.3
AC025726-18|AAK73910.1| 996|Caenorhabditis elegans Hypothetical... 29 4.3
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical... 29 4.3
U28737-8|ABA61869.1| 537|Caenorhabditis elegans Hypothetical pr... 28 5.7
U28737-7|ABA61870.1| 501|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 28 7.5
AL132851-1|CAB60411.1| 403|Caenorhabditis elegans Hypothetical ... 28 7.5
Z70208-7|CAA94139.1| 287|Caenorhabditis elegans Hypothetical pr... 27 9.9
AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical ... 27 9.9
AF024494-12|AAB70332.3| 332|Caenorhabditis elegans Serpentine r... 27 9.9
>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
Length = 2553
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -1
Query: 682 PQTQNNTVISVSVMVFCSARIVLCVCCRARAVRSSIRYIMSAVRFNIVATNARESVRNRI 503
PQ Q + S + F ++++V C AR V +I + + AT +SV N +
Sbjct: 728 PQVQERVIQSATKCAFATSQLVAC----ARVVAPTIDNNACQQQLSTAATEVTQSVNNLL 783
Query: 502 ND 497
+D
Sbjct: 784 HD 785
>AC025726-18|AAK73910.1| 996|Caenorhabditis elegans Hypothetical
protein Y71G12B.11b protein.
Length = 996
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -1
Query: 682 PQTQNNTVISVSVMVFCSARIVLCVCCRARAVRSSIRYIMSAVRFNIVATNARESVRNRI 503
PQ Q + S + F ++++V C AR V +I + + AT +SV N +
Sbjct: 728 PQVQERVIQSATKCAFATSQLVAC----ARVVAPTIDNNACQQQLSTAATEVTQSVNNLL 783
Query: 502 ND 497
+D
Sbjct: 784 HD 785
>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
protein Y71G12B.11a protein.
Length = 2553
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -1
Query: 682 PQTQNNTVISVSVMVFCSARIVLCVCCRARAVRSSIRYIMSAVRFNIVATNARESVRNRI 503
PQ Q + S + F ++++V C AR V +I + + AT +SV N +
Sbjct: 728 PQVQERVIQSATKCAFATSQLVAC----ARVVAPTIDNNACQQQLSTAATEVTQSVNNLL 783
Query: 502 ND 497
+D
Sbjct: 784 HD 785
>U28737-8|ABA61869.1| 537|Caenorhabditis elegans Hypothetical
protein F14B8.5a protein.
Length = 537
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 665 HCNFGVSNGIL*CAYSFMRVLPCACSTQQY 576
+CNF SN C +SF+ V+ CA + QY
Sbjct: 172 NCNFVPSNHQNQCQFSFVLVISCADQSIQY 201
>U28737-7|ABA61870.1| 501|Caenorhabditis elegans Hypothetical
protein F14B8.5b protein.
Length = 501
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 665 HCNFGVSNGIL*CAYSFMRVLPCACSTQQY 576
+CNF SN C +SF+ V+ CA + QY
Sbjct: 136 NCNFVPSNHQNQCQFSFVLVISCADQSIQY 165
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Frame = -1
Query: 166 DNCKPQSPARRSFSGLPGPLGQ----GE--HADSFSVA 71
++C+ +PAR+ G PGP GQ GE H+D+ S A
Sbjct: 190 NDCQTCAPARQGAPGPPGPAGQPGQPGEPGHSDTSSTA 227
>AL132851-1|CAB60411.1| 403|Caenorhabditis elegans Hypothetical
protein Y53H1B.1 protein.
Length = 403
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = -2
Query: 432 TYHTQYNTR**SFRRFPYGNLVTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 253
TY+ N F + + V+T+ S+ +N PPR GP S S S
Sbjct: 230 TYNKDNNVAYAQVNTFKFADKVSTYFQCAVSTCMNTEGMCDGKTPPRCGPAGSFRSSSSS 289
Query: 252 SD 247
+D
Sbjct: 290 ND 291
>Z70208-7|CAA94139.1| 287|Caenorhabditis elegans Hypothetical
protein F54B11.7 protein.
Length = 287
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -2
Query: 324 PTTPTAVKPPRVGPKTSLNHS-IGSSD 247
PTTP A KP PKTSL+ S GS+D
Sbjct: 69 PTTPPA-KPKEPAPKTSLSKSDSGSAD 94
>AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical
protein Y39E4B.1 protein.
Length = 610
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 192 LLGIPRLWGIIANPNPQHEGVSAGCPGL*ARENM 91
L G+P ++G++ P+ EG++ G ENM
Sbjct: 300 LYGVPGVYGVVTLPSGVREGINMFLEGFIRTENM 333
>AF024494-12|AAB70332.3| 332|Caenorhabditis elegans Serpentine
receptor, class u protein28 protein.
Length = 332
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 391 AEGSLTCVVLCVICKYFIYLFIYIYACIHSIVLNFY 498
AE SLT + +IC Y I I A ++SI ++Y
Sbjct: 252 AEVSLTVTTVSMICSYLSNSMIVIAAQLNSIEYSYY 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,982,052
Number of Sequences: 27780
Number of extensions: 317804
Number of successful extensions: 959
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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