Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30583
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    31   0.18 
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    27   2.2  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   9.0  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    25   9.0  

>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 634  RARTVLPTRSGPSSNALPPRNRSRFNVPGT 545
            R + +LP RSG SS+ +P  N +  NVP T
Sbjct: 1016 RVKPLLPPRSGSSSSGVPAPNLTPVNVPPT 1045


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 304 VKCIWRRKLSFRMLSSWYCRNLRRCRSSIC 393
           VKCI    LS  +LS  + RNL R   S C
Sbjct: 362 VKCICLTDLSVILLSGSFSRNLERVHLSYC 391


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 109 IHEIRFSCNSSLIVSTPASDLYVLTLVSFV 198
           I E+ FS  +S IVS  A D+Y+  + SFV
Sbjct: 220 IDELDFSVLNS-IVSLDAKDIYIRVICSFV 248


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 398 ERRRELNKLDRTGTSVTIKILLPVGCGDS 484
           +RRR+L K+ + G  V  + LL +GCGD+
Sbjct: 13  QRRRKLFKILQGGFPV--RSLLDIGCGDA 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,177,068
Number of Sequences: 5004
Number of extensions: 64775
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)