Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30583
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58701| Best HMM Match : bZIP_2 (HMM E-Value=1.6)                    34   0.14 
SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)                 30   2.3  
SB_36772| Best HMM Match : WD40 (HMM E-Value=3.8e-05)                  28   7.2  
SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19)              28   7.2  

>SB_58701| Best HMM Match : bZIP_2 (HMM E-Value=1.6)
          Length = 940

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 15/61 (24%), Positives = 35/61 (57%)
 Frame = -2

Query: 197 TKLTNVSTYKSDAGVETIKLELQENLISWISNGVC*INQKRLPYNRLTLTVPRHLVRTLV 18
           TKL+++ + +SDA + ++ L +Q N +  +S      NQ    ++  +  +P++ +R+ +
Sbjct: 219 TKLSDLGSIRSDANLHSMDLAIQSNTVDGLSAQASGGNQNSYAFSCFSCEIPQNSLRSEL 278

Query: 17  P 15
           P
Sbjct: 279 P 279


>SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)
          Length = 884

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -3

Query: 682 ATGIPMLTNTSLYRRARARTVLPTRSGPSSNALPPRNRSRFNVPGTT 542
           A+  P + ++S   +A   T  PT +G S  + P  N++ +N+PG T
Sbjct: 327 ASTAPSMPSSSAIPQASQGTA-PTTTGASGASSPAPNQTAYNIPGMT 372


>SB_36772| Best HMM Match : WD40 (HMM E-Value=3.8e-05)
          Length = 788

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 606 RVLHQTPYHLVTVQDL-TSQVQHSRAVIRTD 517
           R L++ PYHLV  Q+L TS+ + S A+  +D
Sbjct: 318 RKLNELPYHLVHAQELETSKTRSSTAMTASD 348


>SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19)
          Length = 951

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 631 ARTVLPTRSGPSSNALPPRN 572
           ART+ PT  GP +  LPP N
Sbjct: 829 ARTLPPTNDGPHARTLPPTN 848


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,286,944
Number of Sequences: 59808
Number of extensions: 505550
Number of successful extensions: 919
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)