Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30581
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical pr...    31   0.78 
U41107-7|AAY55831.1|   38|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF078790-4|AAC26932.1|  311|Caenorhabditis elegans Hypothetical ...    28   7.2  
AC006681-3|AAK85494.1|  311|Caenorhabditis elegans Hypothetical ...    28   7.2  

>Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical protein
            W09D10.2 protein.
          Length = 1335

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +3

Query: 36   IRHFGHRVWQAQLWTFGLLCPTCQLRILRTFHLRL 140
            I +F +R     +WTFG L  T QL I+ TFHL L
Sbjct: 1162 ICYFTYRGSNVDMWTFGHLLVT-QLIIVNTFHLAL 1195


>U41107-7|AAY55831.1|   38|Caenorhabditis elegans Hypothetical
           protein F55C12.2 protein.
          Length = 38

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 634 VKRRPVNCNTTHYRANWVPGPPLEY 560
           +K+   NC    Y+ +W PG PL Y
Sbjct: 1   MKQALANCGKPEYQYDWEPGIPLNY 25


>AF078790-4|AAC26932.1|  311|Caenorhabditis elegans Hypothetical
           protein F36H12.8 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 637 VVKRRPVNCNTTHYRANWVPGPPLEY 560
           ++K+   NC    Y  +W PG PL Y
Sbjct: 283 LMKQTLANCGKPEYPYDWEPGMPLNY 308


>AC006681-3|AAK85494.1|  311|Caenorhabditis elegans Hypothetical
           protein R13H9.5 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 637 VVKRRPVNCNTTHYRANWVPGPPLEY 560
           ++K+   NC    Y  +W PG PL Y
Sbjct: 283 LMKQALANCGKPEYPYDWEPGMPLNY 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,221,089
Number of Sequences: 27780
Number of extensions: 127737
Number of successful extensions: 337
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)