Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30580
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0470 + 9629062-9629355,9629948-9630893,9630948-9631102,963...    29   3.1  
05_05_0122 - 22533212-22533375,22533658-22533763,22533878-22533916     29   3.1  
09_04_0394 - 17261008-17262476,17262554-17262743                       27   9.4  

>09_02_0470 +
           9629062-9629355,9629948-9630893,9630948-9631102,
           9631299-9631358,9633374-9633444,9633626-9633663,
           9633824-9633876,9633970-9635235,9635632-9635672,
           9636821-9636887
          Length = 996

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 400 LFMNSFLKFFHFRVLEVVICFNLEL 326
           L  ++FL+  H R+L++  C++LEL
Sbjct: 620 LLADAFLRLNHLRILDLTCCYDLEL 644


>05_05_0122 - 22533212-22533375,22533658-22533763,22533878-22533916
          Length = 102

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -3

Query: 436 MGPSSDSAPTT*LFMNSFLKFFHFRVLEVVICFNLELKRLTPASDAAGAISAIVTSNIHQ 257
           MG SS SA        S+++  H  ++E  ICFNL  +    A +    I+ +VTS + +
Sbjct: 1   MGDSSSSA--------SYIRMVH-HLIEKCICFNLNKEECMEALEKHANINPVVTSTVWK 51

Query: 256 PL 251
            L
Sbjct: 52  EL 53


>09_04_0394 - 17261008-17262476,17262554-17262743
          Length = 552

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 494 IWLQLSKYHISFMSSSAEIYG-TFFRFCSNNVIIHEFFSEIL 372
           +W  +++YH S+M+   E  G     F  + V   E+F +I+
Sbjct: 335 VWELITRYHTSYMAKFEENIGIQITTFAGSKVSSEEYFKQIV 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,529,156
Number of Sequences: 37544
Number of extensions: 284349
Number of successful extensions: 854
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)