Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30580
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13953| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.45 
SB_45954| Best HMM Match : VWA (HMM E-Value=4e-26)                     29   2.4  
SB_37417| Best HMM Match : rve (HMM E-Value=0.27)                      29   4.2  

>SB_13953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 439

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 555 YFQVLRICCSS--CSQKQHKNYNLASIVQVSYLLHVELCRDIW 433
           Y   L +CC    CSQ   K Y  ASI  +SY   V+L + ++
Sbjct: 328 YMVKLSVCCKETVCSQVAEKTYQAASIEGISYRFDVKLDKPLF 370


>SB_45954| Best HMM Match : VWA (HMM E-Value=4e-26)
          Length = 715

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
 Frame = +3

Query: 141 CTRAIY-TSCVKFNILLVSFNFFLCLLQSIKMKNRSRQSGWWILLVTMALIAPAASEAGV 317
           C    Y  +C   N  ++ F  F+   Q++ +KN  +   +  LL+    IAP  +   V
Sbjct: 481 CQEGFYGINCTNKNPGMLDFVIFMDASQAVGLKNFKKNLDFAKLLIDGYAIAPDKTRVAV 540

Query: 318 NLFNSRLKQITTSSTLKWKNFRKEFMNN--YVVGAESE-EGPIYLCR 449
            +F S  K     S    K   KE ++N  ++ G++S  E  + L R
Sbjct: 541 VVFASNSKITFHFSESFNKTIVKEGLSNSEFLNGSDSNLESALELAR 587


>SB_37417| Best HMM Match : rve (HMM E-Value=0.27)
          Length = 354

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = +3

Query: 267 LLVTMALIAPAASEA-GVNLFNSRLKQITTSSTLKWKNFRKEFMNNYVVGAESEEGPIYL 443
           L+VT+ ++ P  +EA G+ L     K++  S+T +   FR    + Y+V  ++ +GP+Y 
Sbjct: 232 LVVTLTVVQPVDTEALGMTLGVPLKKKL--SATDRALLFRVSNHSEYLVYRQNVDGPVYF 289

Query: 444 CR 449
            R
Sbjct: 290 VR 291


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,374,032
Number of Sequences: 59808
Number of extensions: 347566
Number of successful extensions: 1161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)