Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30580
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49850.1 68416.m05450 myb family transcription factor contain...    29   3.4  
At2g47000.1 68415.m05871 multidrug resistant (MDR) ABC transport...    28   4.5  
At5g37920.1 68418.m04568 hypothetical protein contains Pfam PF04...    27   7.9  

>At3g49850.1 68416.m05450 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 295

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +3

Query: 321 LFNSRLKQITTSSTLKWKNFRKEFMNNYVVGAESEEGPIYLCRARHE 461
           L  SRLK +T   TL  K  +     NY+   E +  P  L     E
Sbjct: 162 LVTSRLKYLTNVGTLVKKKHKYRISQNYMAEGEGQRSPQLLLEGNKE 208


>At2g47000.1 68415.m05871 multidrug resistant (MDR) ABC transporter,
           putative similar to multidrug-resistant protein CjMDR1
           [Coptis japonica] GI:14715462, MDR-like p-glycoprotein
           [Arabidopsis thaliana] GI:24324262; contains Pfam
           profiles PF00005: ABC transporter, PF00664: ABC
           transporter transmembrane region
          Length = 1286

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 462 GDMILGQLKPDYSSCAVSGSKSYSIFEVLENIEN 563
           G M LGQ  P  S+ A   + +Y +FE +E   N
Sbjct: 333 GSMSLGQTSPCLSAFAAGQAAAYKMFETIERRPN 366


>At5g37920.1 68418.m04568 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577)); common family
           comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430 
           contains Pfam PF04510 : Family of unknown function
           (DUF577)
          Length = 609

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 480 QLKPDYSSCAVSGSKSYSIFEVLENIEN 563
           QL+P + SC      SYS+F+VL  + N
Sbjct: 381 QLQPLFMSCLKEQGVSYSMFQVLGQVVN 408


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,955,365
Number of Sequences: 28952
Number of extensions: 248646
Number of successful extensions: 756
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)