Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30578
         (363 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC090999-7|AAK26142.1|  438|Caenorhabditis elegans Hypothetical ...    29   1.00 
AC024817-54|AAF59564.1|  229|Caenorhabditis elegans Hypothetical...    27   4.0  
AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    27   5.3  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    27   5.3  
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g...    26   7.0  
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ...    26   7.0  

>AC090999-7|AAK26142.1|  438|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.12 protein.
          Length = 438

 Score = 29.1 bits (62), Expect = 1.00
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 175 REAVMRFGLKGGAAVVTIIETLEFISQG 258
           R AV++FG+     +V IIET+ F+S G
Sbjct: 136 RTAVVKFGMHFDKVMVAIIETMVFLSLG 163


>AC024817-54|AAF59564.1|  229|Caenorhabditis elegans Hypothetical
           protein Y54G2A.27 protein.
          Length = 229

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -1

Query: 360 FFFFFAYVSGRVH-SPPG 310
           FFFFF + SGR+  +PPG
Sbjct: 177 FFFFFFFFSGRIDLTPPG 194


>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 193 NALLLHGRNRQGGGTYPCG 137
           +A L+ GRN++ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 193 NALLLHGRNRQGGGTYPCG 137
           +A L+ GRN++ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of
           glp-1 protein.
          Length = 1492

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 96  FSRFFILTHWCID-INSRTKNAERHNLYIYH 7
           +   F+ + +  D I+++ +NAE+ N +IYH
Sbjct: 309 YPELFVTSSFLFDVISAKQRNAEKENDFIYH 339


>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
           protein Y53H1C.2a protein.
          Length = 1512

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 96  FSRFFILTHWCID-INSRTKNAERHNLYIYH 7
           +   F+ + +  D I+++ +NAE+ N +IYH
Sbjct: 329 YPELFVTSSFLFDVISAKQRNAEKENDFIYH 359


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,132,090
Number of Sequences: 27780
Number of extensions: 184207
Number of successful extensions: 351
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)