Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30576
(404 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 171 3e-44
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 171 5e-44
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 171 5e-44
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 94 6e-21
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 90 1e-19
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 61 7e-11
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 45 5e-06
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 42 3e-05
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 33 0.017
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 33 0.017
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 31 0.068
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 30 0.12
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.16
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 29 0.21
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.21
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ... 28 0.48
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 28 0.63
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 2.6
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 3.4
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 25 3.4
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 25 3.4
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 25 3.4
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.9
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 24 7.8
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 24 7.8
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 171 bits (416), Expect = 3e-44
Identities = 81/90 (90%), Positives = 84/90 (93%)
Frame = +3
Query: 132 GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDXIALWKFETSKYYVTII 311
GGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAERERGITID IALWKFET KY VT+I
Sbjct: 32 GGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITID-IALWKFETPKYNVTVI 90
Query: 312 DAPGHRDFIKNMITGTSQADCAVLIVXAGT 401
DAPGHRDFIKNMITGTSQADCAVLI+ GT
Sbjct: 91 DAPGHRDFIKNMITGTSQADCAVLIIGGGT 120
Score = 64.1 bits (149), Expect = 8e-12
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYK 127
MGKEK HIN+VVIGHVDSGKSTTTGHLIYK
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYK 30
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 171 bits (415), Expect = 5e-44
Identities = 80/90 (88%), Positives = 84/90 (93%)
Frame = +3
Query: 132 GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDXIALWKFETSKYYVTII 311
GGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAERERGITID IALWKFET KY VT+I
Sbjct: 32 GGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITID-IALWKFETPKYNVTVI 90
Query: 312 DAPGHRDFIKNMITGTSQADCAVLIVXAGT 401
DAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 91 DAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Score = 64.1 bits (149), Expect = 8e-12
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYK 127
MGKEK HIN+VVIGHVDSGKSTTTGHLIYK
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYK 30
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 171 bits (415), Expect = 5e-44
Identities = 80/90 (88%), Positives = 84/90 (93%)
Frame = +3
Query: 132 GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDXIALWKFETSKYYVTII 311
GGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAERERGITID IALWKFET KY VT+I
Sbjct: 32 GGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITID-IALWKFETPKYNVTVI 90
Query: 312 DAPGHRDFIKNMITGTSQADCAVLIVXAGT 401
DAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 91 DAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Score = 64.1 bits (149), Expect = 8e-12
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYK 127
MGKEK HIN+VVIGHVDSGKSTTTGHLIYK
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYK 30
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 94.3 bits (224), Expect = 6e-21
Identities = 46/86 (53%), Positives = 57/86 (66%)
Frame = +3
Query: 132 GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDXIALWKFETSKYYVTII 311
G I+ R+++K EA GKGSF YAW+LD + ER RG+T+D +A FE+ K I
Sbjct: 202 GEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMD-VASTTFESDKKIYEIG 260
Query: 312 DAPGHRDFIKNMITGTSQADCAVLIV 389
DAPGHRDFI MI G S AD AVL+V
Sbjct: 261 DAPGHRDFISGMIAGASSADFAVLVV 286
Score = 33.5 bits (73), Expect = 0.013
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +2
Query: 50 KTHINIVVIGHVDSGKSTTTGHLIYK 127
K +++VV GHVDSGKST G ++++
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFE 200
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 89.8 bits (213), Expect = 1e-19
Identities = 41/88 (46%), Positives = 59/88 (67%)
Frame = +3
Query: 132 GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDXIALWKFETSKYYVTII 311
G +DKRT+EK E+EA+E GK S+ +W LD ERE+G T++ + FET +++
Sbjct: 263 GMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVE-VGRAYFETEHRRFSLL 321
Query: 312 DAPGHRDFIKNMITGTSQADCAVLIVXA 395
DAPGH+ ++ NMI G SQAD VL++ A
Sbjct: 322 DAPGHKGYVTNMINGASQADIGVLVISA 349
Score = 39.5 bits (88), Expect = 2e-04
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +2
Query: 50 KTHINIVVIGHVDSGKSTTTGHLIY 124
K H+NIV IGHVD+GKST G++++
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILF 260
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 60.9 bits (141), Expect = 7e-11
Identities = 29/72 (40%), Positives = 45/72 (62%)
Frame = +3
Query: 180 EMGKGSFKYAWVLDKLKAERERGITIDXIALWKFETSKYYVTIIDAPGHRDFIKNMITGT 359
++G+ SF +DK E+ RGITI + ++ET+ + +D PGH D+IKNMITG
Sbjct: 79 DLGQASFMDYSQIDKAPEEKARGITISSAHV-EYETANRHYAHVDCPGHADYIKNMITGA 137
Query: 360 SQADCAVLIVXA 395
+ D A+++V A
Sbjct: 138 ATMDGAIIVVSA 149
Score = 33.5 bits (73), Expect = 0.013
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +2
Query: 44 KEKTHINIVVIGHVDSGKSTTT 109
++K H+NI IGHVD GK+T T
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLT 70
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 44.8 bits (101), Expect = 5e-06
Identities = 24/59 (40%), Positives = 33/59 (55%)
Frame = +3
Query: 213 VLDKLKAERERGITIDXIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 389
V+D L AER+RGITI+ A+ F + +ID PGH DF + + D AV I+
Sbjct: 67 VMDYLPAERQRGITINSAAI-SFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAII 124
Score = 28.3 bits (60), Expect = 0.48
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +2
Query: 62 NIVVIGHVDSGKSTTTGHLIY 124
N+ +I H+D+GK+T T ++Y
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLY 50
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 42.3 bits (95), Expect = 3e-05
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +3
Query: 216 LDKLKAERERGITIDXIA---LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 386
LDKL+ ER RGIT+ ++ + Y + +ID PGH DF ++ + + +L+
Sbjct: 95 LDKLEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILL 154
Query: 387 VXA 395
V A
Sbjct: 155 VDA 157
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 33.1 bits (72), Expect = 0.017
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYK 127
MGK N+ VI HVD GKST T L+ K
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQK 42
Score = 28.3 bits (60), Expect = 0.48
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 15/73 (20%)
Frame = +3
Query: 216 LDKLKAERERGITIDXIALWKF---------------ETSKYYVTIIDAPGHRDFIKNMI 350
+D E+ERG+TI A+ F + + + V +ID+PGH DF +
Sbjct: 57 MDTRADEQERGVTIKSTAISLFAEMTDDDMKDMKEPADGTDFLVNLIDSPGHVDFSSEVT 116
Query: 351 TGTSQADCAVLIV 389
D A+++V
Sbjct: 117 AALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 33.1 bits (72), Expect = 0.017
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYK 127
MGK N+ VI HVD GKST T L+ K
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQK 42
Score = 28.3 bits (60), Expect = 0.48
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 15/73 (20%)
Frame = +3
Query: 216 LDKLKAERERGITIDXIALWKF---------------ETSKYYVTIIDAPGHRDFIKNMI 350
+D E+ERG+TI A+ F + + + V +ID+PGH DF +
Sbjct: 57 MDTRADEQERGVTIKSTAISLFAEMTDDDMKDMKEPADGTDFLVNLIDSPGHVDFSSEVT 116
Query: 351 TGTSQADCAVLIV 389
D A+++V
Sbjct: 117 AALRVTDGALVVV 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 31.1 bits (67), Expect = 0.068
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 18/78 (23%)
Frame = +3
Query: 216 LDKLKAERERGITIDXIAL---WK---------------FETSKYYVTIIDAPGHRDFIK 341
+D ++ ERE+GITI A W+ FE S Y + IID PGH DF
Sbjct: 102 MDFMELEREKGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTI 160
Query: 342 NMITGTSQADCAVLIVXA 395
+ D AVL++ A
Sbjct: 161 EVERALRVLDGAVLVLCA 178
Score = 27.1 bits (57), Expect = 1.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 62 NIVVIGHVDSGKSTTTGHLIY 124
NI + H+DSGK+T T ++Y
Sbjct: 61 NIGISAHIDSGKTTFTERVLY 81
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 30.3 bits (65), Expect = 0.12
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 279 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 389
F+ ++T +D PGH F G + AD VL+V
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVV 251
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 29.9 bits (64), Expect = 0.16
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXA 395
Y + +ID+PGH DF + + + D A ++V A
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDA 127
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 29.5 bits (63), Expect = 0.21
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 297 YVTIIDAPGHRDFIKNMITGTSQADCAVLIV 389
+V+ +D PGH + M+ G + D A+L++
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLI 139
Score = 25.0 bits (52), Expect = 4.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 32 PKMGKEKTHINIVVIGHVDSGKST 103
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.21
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLIV 389
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 524
Score = 28.3 bits (60), Expect = 0.48
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +3
Query: 195 SFK-YAWVLDKLKA-ERERGITIDXIALWKFETSKYYVTIIDAPGHRDFIKNMIT 353
+FK Y L+ LK E++ G++ID + F+ + + PG+ DF+ N ++
Sbjct: 3 AFKPYTEALEVLKKYEKKDGLSIDDLIRHNFQGGLTFNDFLILPGYIDFVPNNVS 57
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.9 bits (59), Expect = 0.63
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +3
Query: 234 ERERGITIDX----IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 389
ERER ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 185 ERERVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 2.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 246 HAHAQPLVCPIPKHI*RILYPFPGPPSRTSRWY 148
H+H PL P+P +L P P P S WY
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRP-PPVPQVPSHWY 166
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.4 bits (53), Expect = 3.4
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 247 PRSRSAFSLSNTQAYLKDPLPIS-WASFSNFSMVRLSIPP 131
P + + S + + Y+K P+P S ++S N S++ +PP
Sbjct: 558 PTNVNYSSCVDPRTYVKTPIPFSKFSSSENLSLIPSLLPP 597
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 3.4
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +3
Query: 219 DKLKAER-ERGITIDXIALWKFETSKYYV--TIIDAPGHRDFIKN 344
+K++A+ E+ + I+ I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIE-ITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 25.4 bits (53), Expect = 3.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 68 VVIGHVDSGKSTTTGHLIYKXXW 136
+V+GH GK+T +Y+ W
Sbjct: 45 IVLGHTGCGKTTQIPQFLYEAGW 67
>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
transaminase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 696
Score = 25.4 bits (53), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 129 GGGIDKRTIEKFEKEAQEMGKGSFKY 206
GGG RTIE E E + KG++ +
Sbjct: 314 GGGSTTRTIETLEMEIASVMKGNYDH 339
>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 96
Score = 24.6 bits (51), Expect = 5.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 353 CDHVLDEISVSRSINDGNIVLASFEL 276
CDH+L IS SR G + FEL
Sbjct: 23 CDHLLQYISNSRDSKAGLKIFLVFEL 48
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 24.2 bits (50), Expect = 7.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 314 INDGNIVLASFELPESNXIDCDTTLTLSL 228
+ DGNIV+ F+ E + D+ L +SL
Sbjct: 640 LQDGNIVITFFQQDEDFHLSFDSWLGVSL 668
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 24.2 bits (50), Expect = 7.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 323 SRSINDGNIVLASFELPESNXIDCDTTLTLS 231
S+ +ND N + S ESN + DT++ +S
Sbjct: 443 SKDLNDTNSITGSSPTEESNALVEDTSVDIS 473
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,496,560
Number of Sequences: 5004
Number of extensions: 25894
Number of successful extensions: 121
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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