Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30576
(404 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 124 3e-29
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 88 2e-18
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 62 2e-10
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 60 7e-10
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 39 0.002
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 0.82
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 30 0.82
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_28228| Best HMM Match : Cadherin (HMM E-Value=0) 29 1.9
SB_9507| Best HMM Match : Cadherin (HMM E-Value=0) 29 1.9
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 28 2.5
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24) 28 3.3
SB_53795| Best HMM Match : rve (HMM E-Value=5.9e-15) 28 3.3
SB_53279| Best HMM Match : rve (HMM E-Value=5.2e-36) 28 3.3
SB_35114| Best HMM Match : RVT_1 (HMM E-Value=2.2e-11) 28 3.3
SB_24279| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 27 4.4
SB_9796| Best HMM Match : uDENN (HMM E-Value=1.1e-35) 27 5.8
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 27 5.8
SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37) 27 7.7
SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013) 27 7.7
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 27 7.7
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 124 bits (299), Expect = 3e-29
Identities = 58/61 (95%), Positives = 59/61 (96%)
Frame = +3
Query: 183 MGKGSFKYAWVLDKLKAERERGITIDXIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 362
MGKGSFKYAWVLDKLKAERERGITID IALWKFET KYYVT+IDAPGHRDFIKNMITGTS
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITID-IALWKFETLKYYVTVIDAPGHRDFIKNMITGTS 59
Query: 363 Q 365
Q
Sbjct: 60 Q 60
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 88.2 bits (209), Expect = 2e-18
Identities = 37/88 (42%), Positives = 62/88 (70%)
Frame = +3
Query: 132 GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDXIALWKFETSKYYVTII 311
G +DKRT+EK+E+EA+E + ++ +W LD + ER++G T++ + F+T + T++
Sbjct: 169 GQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVE-VGRAAFDTDTKHFTLL 227
Query: 312 DAPGHRDFIKNMITGTSQADCAVLIVXA 395
DAPGH+ F+ NMI+G +QAD VL++ A
Sbjct: 228 DAPGHKSFVPNMISGATQADLGVLVISA 255
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 61.7 bits (143), Expect = 2e-10
Identities = 28/30 (93%), Positives = 28/30 (93%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYK 127
M KEK HINIVVIGHVDSGKSTTTGHLIYK
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYK 30
Score = 35.9 bits (79), Expect = 0.013
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +3
Query: 132 GGIDKRTIEKFEKEAQEM 185
GGIDKRTIEKFEKE+ E+
Sbjct: 32 GGIDKRTIEKFEKESSEV 49
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 60.1 bits (139), Expect = 7e-10
Identities = 25/46 (54%), Positives = 35/46 (76%)
Frame = +3
Query: 264 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGT 401
+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A T
Sbjct: 3 VGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAIT 48
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/74 (25%), Positives = 36/74 (48%)
Frame = +3
Query: 168 KEAQEMGKGSFKYAWVLDKLKAERERGITIDXIALWKFETSKYYVTIIDAPGHRDFIKNM 347
+EA + K D ++ ER+RGI++ L F + I+D PGH+DF ++
Sbjct: 38 QEAGAVKSNKIKKGATSDFMEIERQRGISVATSVL-AFNYRDKKINILDTPGHKDFAEDT 96
Query: 348 ITGTSQADCAVLIV 389
+ D ++++
Sbjct: 97 FRTLTAVDSVIVVI 110
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 0.82
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLIV 389
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 29.9 bits (64), Expect = 0.82
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYK 127
M K+ N+ VI HVD GKST T L+ K
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSK 41
Score = 27.5 bits (58), Expect = 4.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 389
+ + +ID+PGH DF + D A+++V
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVV 130
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 53 THINIVVIGHVDSGKSTTTGHLIY 124
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVXA 395
+T ID PGH F G + D VL+V A
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAA 109
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +3
Query: 213 VLDKLKAERERGITI 257
VLDKL+ ERERGIT+
Sbjct: 1977 VLDKLQVERERGITV 1991
>SB_28228| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 838
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 201 KYAWVLDKLKAERERGITIDXIALWKFETSKYYVTIIDAPGHRDFIKNMITG 356
+YA+ +D+ RG TI + F S +I+ GH+ F+ + +TG
Sbjct: 613 EYAFYVDE---NTPRGYTIGTVDAKSFSGSLLEYMVIEGSGHKRFVLDSVTG 661
>SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2735
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 201 KYAWVLDKLKAERERGITIDXIALWKFETSKYYVTIIDAPGHRDFIKNMITG 356
+YA+ +D+ RG TI + F S +I+ GH+ F+ + +TG
Sbjct: 634 EYAFYVDE---NTPRGYTIGTVDAKSFSGSLLEYMVIEGSGHKRFVLDSVTG 682
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/54 (24%), Positives = 20/54 (37%)
Frame = +3
Query: 234 ERERGITIDXIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXA 395
E E G I + + + +D PGH F G D +++V A
Sbjct: 118 EGESGGITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
Length = 2160
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 234 ERERG-ITIDXIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVL 383
+R +G I D I WK E S Y II PG + + + S+A CA L
Sbjct: 735 QRHKGKIKNDKIMRWKIELSCYSFDIIYRPGKENIPPDTL---SRATCATL 782
>SB_53795| Best HMM Match : rve (HMM E-Value=5.9e-15)
Length = 615
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 234 ERERG-ITIDXIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVL 383
+R +G I D I WK E S Y II PG + + + S+A CA L
Sbjct: 332 QRHKGKIKNDKIMRWKIELSCYSFDIIYRPGKENIPPDTL---SRATCATL 379
>SB_53279| Best HMM Match : rve (HMM E-Value=5.2e-36)
Length = 337
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 234 ERERG-ITIDXIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVL 383
+R +G I D I WK E S Y II PG + + + S+A CA L
Sbjct: 19 QRHKGKIKNDKIMRWKIELSCYSFDIIYRPGKENIPPDTL---SRATCATL 66
>SB_35114| Best HMM Match : RVT_1 (HMM E-Value=2.2e-11)
Length = 512
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 234 ERERG-ITIDXIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVL 383
+R +G I D I WK E S Y II PG + + + S+A CA L
Sbjct: 292 QRHKGKIKNDKIMRWKIELSCYSFDIIYRPGKENIPPDTL---SRATCATL 339
>SB_24279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 234 ERERG-ITIDXIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVL 383
+R +G I D I WK E S Y II PG + + + S+A CA L
Sbjct: 758 QRHKGKIKNDKIMRWKIELSCYSFDIIYRPGKENIPPDTL---SRATCATL 805
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 27.5 bits (58), Expect = 4.4
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Frame = +3
Query: 219 DKLKAERERGITIDX------IALWKF------ETSKYYVTIIDAPGHRDFIKNMITG 356
DK +ERGIT+D +AL + E +T++D PGH IK +I G
Sbjct: 65 DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG 122
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 35 KMGKEKTHINIVVIGHVDSGKST 103
K+ + + NI V+GHVDSGK++
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTS 50
>SB_9796| Best HMM Match : uDENN (HMM E-Value=1.1e-35)
Length = 300
Score = 27.1 bits (57), Expect = 5.8
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -3
Query: 285 FRTSREQYXRL*YHA-HAQPLVCPIPKHI*RILYPFP-GPPSRTSRW 151
F T+ Y + YHA L P+ +I +LY P PP RT R+
Sbjct: 199 FITAAMSYLQQIYHAAKTADLPLPLESYIYNLLYEVPLPPPGRTMRF 245
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 27.1 bits (57), Expect = 5.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 59 INIVVIGHVDSGKSTTTGHLIY 124
+ + V+G+VD+GKST G L +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTH 251
>SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37)
Length = 1063
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = -2
Query: 196 DPLPIS-----WASFSNFSMVRLSIPPPFVDQVTSGGG 98
+P+P S WA+F +F+ + ++ P V V GGG
Sbjct: 735 EPVPASETDTGWANFDSFTDIGMAASNPVVAVVVGGGG 772
>SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013)
Length = 663
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 156 EKFEKEAQEMGKGSFKYAWVLDKLKAERE 242
+++ K +EM + K W +KLKAE E
Sbjct: 42 KEYSKLKEEMNSDAVKVKWAQNKLKAELE 70
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 26.6 bits (56), Expect = 7.7
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 309 IDAPGHRDFIKNMITGTSQADCAVLIV 389
+D PGH + M+ G + D A+L++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLI 95
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,523,449
Number of Sequences: 59808
Number of extensions: 205106
Number of successful extensions: 486
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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