Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30576
(404 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 163 4e-41
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 163 4e-41
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 163 4e-41
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 163 4e-41
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 100 3e-22
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 81 3e-16
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 59 1e-09
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 58 2e-09
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 42 2e-04
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 40 6e-04
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 40 6e-04
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 38 0.002
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 38 0.003
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 37 0.006
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 35 0.024
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 35 0.024
At5g13650.2 68418.m01585 elongation factor family protein contai... 34 0.041
At5g13650.1 68418.m01584 elongation factor family protein contai... 34 0.041
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 30 0.51
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 30 0.51
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 30 0.68
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 30 0.68
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 30 0.68
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 30 0.68
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 30 0.68
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 29 0.89
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 29 0.89
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 29 1.2
At5g37055.1 68418.m04446 zinc finger (HIT type) family protein c... 27 6.3
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 26 8.3
At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containi... 26 8.3
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 163 bits (396), Expect = 4e-41
Identities = 77/90 (85%), Positives = 82/90 (91%)
Frame = +3
Query: 132 GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDXIALWKFETSKYYVTII 311
GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERERGITID IALWKFET+KYY T+I
Sbjct: 32 GGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITID-IALWKFETTKYYCTVI 90
Query: 312 DAPGHRDFIKNMITGTSQADCAVLIVXAGT 401
DAPGHRDFIKNMITGTSQADCAVLI+ + T
Sbjct: 91 DAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Score = 64.5 bits (150), Expect = 3e-11
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYK 127
MGKEK HINIVVIGHVDSGKSTTTGHLIYK
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYK 30
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 163 bits (396), Expect = 4e-41
Identities = 77/90 (85%), Positives = 82/90 (91%)
Frame = +3
Query: 132 GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDXIALWKFETSKYYVTII 311
GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERERGITID IALWKFET+KYY T+I
Sbjct: 32 GGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITID-IALWKFETTKYYCTVI 90
Query: 312 DAPGHRDFIKNMITGTSQADCAVLIVXAGT 401
DAPGHRDFIKNMITGTSQADCAVLI+ + T
Sbjct: 91 DAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Score = 64.5 bits (150), Expect = 3e-11
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYK 127
MGKEK HINIVVIGHVDSGKSTTTGHLIYK
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYK 30
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 163 bits (396), Expect = 4e-41
Identities = 77/90 (85%), Positives = 82/90 (91%)
Frame = +3
Query: 132 GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDXIALWKFETSKYYVTII 311
GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERERGITID IALWKFET+KYY T+I
Sbjct: 32 GGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITID-IALWKFETTKYYCTVI 90
Query: 312 DAPGHRDFIKNMITGTSQADCAVLIVXAGT 401
DAPGHRDFIKNMITGTSQADCAVLI+ + T
Sbjct: 91 DAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Score = 64.5 bits (150), Expect = 3e-11
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYK 127
MGKEK HINIVVIGHVDSGKSTTTGHLIYK
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYK 30
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 163 bits (396), Expect = 4e-41
Identities = 77/90 (85%), Positives = 82/90 (91%)
Frame = +3
Query: 132 GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDXIALWKFETSKYYVTII 311
GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERERGITID IALWKFET+KYY T+I
Sbjct: 32 GGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITID-IALWKFETTKYYCTVI 90
Query: 312 DAPGHRDFIKNMITGTSQADCAVLIVXAGT 401
DAPGHRDFIKNMITGTSQADCAVLI+ + T
Sbjct: 91 DAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Score = 64.5 bits (150), Expect = 3e-11
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYK 127
MGKEK HINIVVIGHVDSGKSTTTGHLIYK
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYK 30
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 100 bits (240), Expect = 3e-22
Identities = 43/88 (48%), Positives = 65/88 (73%)
Frame = +3
Query: 132 GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDXIALWKFETSKYYVTII 311
G I ++ + K+EKEA+ GKGSF YAW LD+ ERERGIT+ +A+ F + +++V ++
Sbjct: 264 GRISQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITM-TVAVAYFNSKRHHVVLL 322
Query: 312 DAPGHRDFIKNMITGTSQADCAVLIVXA 395
D+PGH+DF+ NMI G +QAD A+L++ A
Sbjct: 323 DSPGHKDFVPNMIAGATQADAAILVIDA 350
Score = 35.9 bits (79), Expect = 0.010
Identities = 12/24 (50%), Positives = 20/24 (83%)
Frame = +2
Query: 53 THINIVVIGHVDSGKSTTTGHLIY 124
+ +N+ ++GHVDSGKST +G L++
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLH 261
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 81.0 bits (191), Expect = 3e-16
Identities = 37/88 (42%), Positives = 59/88 (67%)
Frame = +3
Query: 132 GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDXIALWKFETSKYYVTII 311
G +D R I+K+EKEA++ + S+ A+++D + ER +G T++ + FET TI+
Sbjct: 126 GQVDDRQIQKYEKEAKDKSRESWYMAYIMDTNEEERLKGKTVE-VGRAHFETESTRFTIL 184
Query: 312 DAPGHRDFIKNMITGTSQADCAVLIVXA 395
DAPGH+ ++ NMI+G SQAD VL++ A
Sbjct: 185 DAPGHKSYVPNMISGASQADIGVLVISA 212
Score = 38.7 bits (86), Expect = 0.001
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +2
Query: 47 EKTHINIVVIGHVDSGKSTTTGHLIY 124
+K H+N+V IGHVD+GKST G +++
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILF 123
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 59.3 bits (137), Expect = 1e-09
Identities = 27/58 (46%), Positives = 40/58 (68%)
Frame = +3
Query: 216 LDKLKAERERGITIDXIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 389
+DK E++RGITI A ++ET+K + +D PGH D++KNMITG +Q D +L+V
Sbjct: 105 IDKAPEEKKRGITI-ATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVV 161
Score = 32.7 bits (71), Expect = 0.096
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 44 KEKTHINIVVIGHVDSGKSTTT 109
+ K H+N+ IGHVD GK+T T
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLT 84
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 58.0 bits (134), Expect = 2e-09
Identities = 26/58 (44%), Positives = 38/58 (65%)
Frame = +3
Query: 216 LDKLKAERERGITIDXIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 389
+D ER RGITI+ + ++ET + +D PGH D++KNMITG +Q D A+L+V
Sbjct: 117 IDAAPEERARGITINTATV-EYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVV 173
Score = 35.5 bits (78), Expect = 0.014
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 35 KMGKEKTHINIVVIGHVDSGKSTTTGHL 118
K ++K H+NI IGHVD GK+T T L
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAAL 99
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Frame = +3
Query: 216 LDKLKAERERGITIDXIAL---WKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 386
LD + ERERGITI A + +E + + + +ID PGH DF + + + A+L+
Sbjct: 123 LDNMDLERERGITIKLQAARMRYVYEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLV 182
Query: 387 VXA 395
V A
Sbjct: 183 VDA 185
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 39.9 bits (89), Expect = 6e-04
Identities = 22/58 (37%), Positives = 30/58 (51%)
Frame = +3
Query: 216 LDKLKAERERGITIDXIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 389
+D + ERE+GITI A + Y V IID PGH DF + D A+L++
Sbjct: 108 MDSMDLEREKGITIQSAATY-CTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVL 164
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 39.9 bits (89), Expect = 6e-04
Identities = 22/58 (37%), Positives = 30/58 (51%)
Frame = +3
Query: 216 LDKLKAERERGITIDXIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 389
+D + ERE+GITI A + Y V IID PGH DF + D A+L++
Sbjct: 108 MDSMDLEREKGITIQSAATY-CTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVL 164
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 38.3 bits (85), Expect = 0.002
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +3
Query: 216 LDKLKAERERGITIDXIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXA 395
+D L E+ R IT+ ++ + Y + +ID+PGH DF + T +D A+++V A
Sbjct: 49 MDYLDEEQRRAITMKSSSI-SLKYKDYSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDA 107
Score = 29.1 bits (62), Expect = 1.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 62 NIVVIGHVDSGKSTTTGHLI 121
NI ++ HVD GK+T HLI
Sbjct: 11 NICILAHVDHGKTTLADHLI 30
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 37.9 bits (84), Expect = 0.003
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +3
Query: 216 LDKLKAERERGITIDXIALWKFETSKYYVTIIDAPGHRDF 335
+D ++ E+ERGITI A F K+ + IID PGH DF
Sbjct: 136 MDWMEQEQERGITITSAATTTF-WDKHRINIIDTPGHVDF 174
Score = 31.5 bits (68), Expect = 0.22
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 50 KTHINIVVIGHVDSGKSTTTGHLIY 124
K + NI ++ H+D+GK+TTT ++Y
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILY 118
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 36.7 bits (81), Expect = 0.006
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Frame = +3
Query: 216 LDKLKAERERGITIDXIALWKF--------ETSKYYVTIIDAPGHRDFIKNMITGTSQAD 371
LDKL +RERGIT+ F E S Y + +ID PGH DF + S
Sbjct: 103 LDKL--QRERGITVKAQTATMFYENKVEDQEASGYLLNLIDTPGHVDFSYEVSRSLSACQ 160
Query: 372 CAVLIVXA 395
A+L+V A
Sbjct: 161 GALLVVDA 168
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 34.7 bits (76), Expect = 0.024
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = +3
Query: 234 ERERGITIDXI----ALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXA 395
E+ER I+I + L + Y I+D PGH +F M AD AVLIV A
Sbjct: 185 EQERNISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDA 242
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 34.7 bits (76), Expect = 0.024
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = +3
Query: 234 ERERGITIDXI----ALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXA 395
E+ER I+I + L + Y I+D PGH +F M AD AVLIV A
Sbjct: 185 EQERNISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDA 242
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 33.9 bits (74), Expect = 0.041
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 213 VLDKLKAERERGITI-DXIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 389
++D ERERGITI ++ +K V IID PGH DF + + D +L+V
Sbjct: 120 IMDSNDLERERGITILSKNTSITYKNTK--VNIIDTPGHSDFGGEVERVLNMVDGVLLVV 177
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 33.9 bits (74), Expect = 0.041
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 213 VLDKLKAERERGITI-DXIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 389
++D ERERGITI ++ +K V IID PGH DF + + D +L+V
Sbjct: 119 IMDSNDLERERGITILSKNTSITYKNTK--VNIIDTPGHSDFGGEVERVLNMVDGVLLVV 176
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 30.3 bits (65), Expect = 0.51
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 285 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXA 395
T + +V+ +D PGH + M+ G + D A+L++ A
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAA 160
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 30.3 bits (65), Expect = 0.51
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 285 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXA 395
T + +V+ +D PGH + M+ G + D A+L++ A
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAA 160
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 29.9 bits (64), Expect = 0.68
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 297 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVXA 395
+V+ +D PGH + M+ G + D A+LI+ A
Sbjct: 120 HVSFVDCPGHDILMATMLNGAAIMDGALLIIAA 152
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 29.9 bits (64), Expect = 0.68
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLIV 389
+ID PGH F G+S D A+L+V
Sbjct: 113 VIDTPGHESFTNLRSRGSSLCDLAILVV 140
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 29.9 bits (64), Expect = 0.68
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLIV 389
+ID PGH F G+S D A+L+V
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILVV 799
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 29.9 bits (64), Expect = 0.68
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLIV 389
+ID PGH F G+S D A+L+V
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILVV 732
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 29.9 bits (64), Expect = 0.68
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +3
Query: 279 FETSKY----YVTIIDAPGHRDFIKNMITGTSQADCAVLIVXA 395
FE SK +V+ +D PGH + M+ G + D A+L++ A
Sbjct: 112 FENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAA 154
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 29.5 bits (63), Expect = 0.89
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 288 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 389
++Y + +ID+PGH DF + D A+++V
Sbjct: 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 62 NIVVIGHVDSGKSTTTGHLI 121
N+ VI HVD GKST T L+
Sbjct: 21 NMSVIAHVDHGKSTLTDSLV 40
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 29.5 bits (63), Expect = 0.89
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 389
+ +ID PGH F G++ D A+L+V
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILVV 587
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVXA 395
+T +D PGH F + G + D VL+V A
Sbjct: 270 ITFLDTPGHAAFSEMRARGAAVTDIVVLVVAA 301
>At5g37055.1 68418.m04446 zinc finger (HIT type) family protein
contains Pfam profile: PF04438 HIT zinc finger
Length = 171
Score = 26.6 bits (56), Expect = 6.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 216 IPKHI*RILYPFPGPPSRTSRWYVC 142
+P H+ L GPPS +SR Y C
Sbjct: 110 LPSHVPTYLKAAVGPPSSSSRRYFC 134
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 26.2 bits (55), Expect = 8.3
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -1
Query: 389 YDEHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPE 270
+D+HS +L+ D + D + ++ N+VL F P+
Sbjct: 53 FDQHSRAALQAGIDKLADCVGLTLGPRGRNVVLDEFGSPK 92
>At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1322
Score = 26.2 bits (55), Expect = 8.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 380 HSAISLRGSCDHVLDEISVSRSINDGNI 297
HS ++ S +++LD + S S DGN+
Sbjct: 433 HSHLTFESSSENLLDAVVASMSNGDGNV 460
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,086,116
Number of Sequences: 28952
Number of extensions: 144872
Number of successful extensions: 428
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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