Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30574
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    26   1.8  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    26   1.8  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    25   2.3  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    24   5.4  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    23   9.4  

>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 283 ETKFICFIIVMFHNSKLDNNFILCMKIRKTTI 188
           +TK I    VMFH+ +L+N   +C K R   I
Sbjct: 157 KTKAIGISSVMFHSGQLNNVKDICNKFRPENI 188


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 22  KLILCAVRNYCWIKVMCKQSITLNHQFV 105
           K IL   +++CW KV     + L HQ +
Sbjct: 226 KAILAIAKHHCWNKVEHSALLYLEHQLI 253


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 274 FICFIIVMFHNSKLDNNFILCMKIRKTTIDYFMPKM 167
           F C I++    S L+ NF   +K+ +   +  MPK+
Sbjct: 410 FCCSILIELRESILERNFADSIKLLQAHFNVDMPKL 445


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 99   LMV*CYRLFTHYFYPTVISNS 37
            L V C+  F +YF PTV S S
Sbjct: 1116 LPVCCFLRFMYYFLPTVFSLS 1136


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +3

Query: 120 LHYYYLTTFNAFIKICILGMK*SIVVFLIFIHNIKLLSNLLLW 248
           L Y+Y T   A +K+ ++ +   + V  I + NI+    +++W
Sbjct: 127 LTYFYETWVKA-VKVTVISLAKCVKVISIGLFNIRREMMIIIW 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,351,194
Number of Sequences: 5004
Number of extensions: 24569
Number of successful extensions: 51
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)