Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30574
         (337 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34340| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.9  
SB_46475| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  

>SB_34340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/50 (22%), Positives = 28/50 (56%)
 Frame = +1

Query: 16  VLKLILCAVRNYCWIKVMCKQSITLNHQFVKLNKNYIIII*QHLMLS*KY 165
           VL  I+C + +  +  ++C Q +  + Q+   + +Y++   Q+++ S +Y
Sbjct: 17  VLDYIVCDLSDTAYTNIVCTQYVVPSAQYAVSSAHYVVTSAQYVVSSAQY 66


>SB_46475| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 214 CMKIRKTTIDYFMPKMHIFMK 152
           C K+R + +DY  P MH+  +
Sbjct: 71  CQKLRPSWVDYTRPSMHLIQE 91


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 283  LKIKKRGGPVPNSPYS 330
            ++IKK G  VP SPYS
Sbjct: 2480 IRIKKEGKDVPGSPYS 2495


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,392,886
Number of Sequences: 59808
Number of extensions: 161050
Number of successful extensions: 238
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)