Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30574
         (337 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047657-6|AAK18946.1|  337|Caenorhabditis elegans Serpentine re...    30   0.36 
U39745-2|AAA80444.1|  116|Caenorhabditis elegans Hypothetical pr...    29   1.1  
U39745-1|AAA80443.1|  164|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z74042-11|CAA98535.1|  116|Caenorhabditis elegans Hypothetical p...    27   4.4  
AC006698-1|AAF39993.3|  398|Caenorhabditis elegans Hypothetical ...    27   4.4  
AF045645-3|AAC02610.2|  193|Caenorhabditis elegans Hypothetical ...    26   7.7  

>AF047657-6|AAK18946.1|  337|Caenorhabditis elegans Serpentine
           receptor, class h protein243 protein.
          Length = 337

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 280 TKFICFIIVMFHNSKLDNNFILCMKIRKTTIDYFMPKMH 164
           T FICF++  +HN KL+N   L + +  +     M  +H
Sbjct: 261 TTFICFMMFWYHNQKLNNLGYLVLSLHGSVSTIVMILVH 299


>U39745-2|AAA80444.1|  116|Caenorhabditis elegans Hypothetical
           protein F41C6.3 protein.
          Length = 116

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 90  KPSICKTKQKLHYYYLT 140
           KP IC   QK+ Y+YLT
Sbjct: 79  KPCICTNSQKIRYFYLT 95


>U39745-1|AAA80443.1|  164|Caenorhabditis elegans Hypothetical
           protein F41C6.2 protein.
          Length = 164

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 90  KPSICKTKQKLHYYYLT 140
           KP IC   QK+ Y+YLT
Sbjct: 127 KPCICTNSQKIRYFYLT 143


>Z74042-11|CAA98535.1|  116|Caenorhabditis elegans Hypothetical
           protein T11F9.13 protein.
          Length = 116

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 90  KPSICKTKQKLHYYYLT 140
           KP  C   QK+ Y+YLT
Sbjct: 79  KPCTCTNSQKIRYFYLT 95


>AC006698-1|AAF39993.3|  398|Caenorhabditis elegans Hypothetical
           protein W10C4.1 protein.
          Length = 398

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 87  TKPSICKTKQKLHYYYLTTFNAFIKICILGMK*SIVVFLI 206
           T  S+ K +   H+Y++TT  +F  + ++G   + VVF +
Sbjct: 309 TVNSLLKERLDAHWYHMTTITSF--LVVIGKSLNFVVFCL 346


>AF045645-3|AAC02610.2|  193|Caenorhabditis elegans Hypothetical
           protein K02D7.2 protein.
          Length = 193

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 241 SKLDNNFILCMKIRKTTIDYFMPKMHI 161
           S LDN  ++C   +KT + YF  + H+
Sbjct: 34  SSLDNQKLVCQFCKKTYLTYFGLRRHL 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,422,426
Number of Sequences: 27780
Number of extensions: 137268
Number of successful extensions: 255
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)