Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30574
         (337 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26820.1 68415.m03218 avirulence-responsive family protein / ...    28   1.3  
At5g03780.1 68418.m00343 expressed protein                             26   5.4  
At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g...    26   7.2  
At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR...    25   9.5  

>At2g26820.1 68415.m03218 avirulence-responsive family protein /
           avirulence induced gene (AIG1) family protein similar to
           SP|P54120 AIG1 protein {Arabidopsis thaliana}; contains
           Pfam profile PF04548: AIG1 family
          Length = 463

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 201 LIFIHNIKLLSNLLLWNITIMKQINLVS*NKKKGGPGTQ 317
           ++F+ N+K   +   WN  +  ++NL   N + GGPGTQ
Sbjct: 370 VLFVVNLK--DSAFKWNAAV--KMNLFYINSRPGGPGTQ 404


>At5g03780.1 68418.m00343 expressed protein
          Length = 420

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 49  YCWIKVMCKQSITLNHQFVKLNK 117
           YCW+K++  +S TL  + V+  K
Sbjct: 125 YCWLKIVALKSKTLREKTVEAEK 147


>At3g28390.1 68416.m03547 P-glycoprotein, putative similar to
           P-glycoprotein homologue GI:2292907 from [Hordeum
           vulgare subsp. vulgare]
          Length = 1225

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 6/27 (22%), Positives = 16/27 (59%)
 Frame = +1

Query: 28  ILCAVRNYCWIKVMCKQSITLNHQFVK 108
           ++C +  YCW +   +Q+  +  +++K
Sbjct: 81  VICFIEGYCWTRTGERQAAKMREKYLK 107


>At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1036

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 250 FHNSKLDNNFILCMKIRK 197
           FHN K+   FI C+K+ K
Sbjct: 879 FHNPKMSLGFINCLKLNK 896


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,644,003
Number of Sequences: 28952
Number of extensions: 113472
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)