Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30573
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    25   0.40 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   3.7  
AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of act...    21   6.5  
AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity mod...    21   6.5  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   6.5  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   8.6  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.40
 Identities = 10/52 (19%), Positives = 27/52 (51%)
 Frame = +3

Query: 234 VFQAQYEPMETEFVNEVAIHGDFVKDVAFQVENLDYILEYARKQGAKVVKDL 389
           +  +Q  P+E   +  +   G +  D  +  E++  +L YA+ +G +++ ++
Sbjct: 253 ITDSQSFPLELPQLPNMTKFGAYSSDKIYHPEDITNLLGYAKLRGVRIIIEI 304


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -2

Query: 416 NAVLIFFFPQILDDFRSLFPCILQYVVQVFHLEGYVFHEVTM---NCDFVYEFGFHWLIL 246
           N+   F F  + +D R++F      ++ V     Y F    M       V +FGF WL+L
Sbjct: 446 NSFTKFEFNTVFNDQRTVFANFYDAMICV----AYKFDAAMMALRTSFLVNDFGFIWLVL 501


>AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of
           activity of ets genes protein.
          Length = 108

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = +3

Query: 21  YKMTTYTDKGRKPDDGRFLAFDHVTFWVSNAKQ 119
           ++  ++ D+   P D R    +HV  W++   Q
Sbjct: 21  WQRLSFDDEDNLPKDPRQWTREHVAQWINLVTQ 53


>AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity
           modulator protein.
          Length = 108

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = +3

Query: 21  YKMTTYTDKGRKPDDGRFLAFDHVTFWVSNAKQ 119
           ++  ++ D+   P D R    +HV  W++   Q
Sbjct: 21  WQRLSFDDEDNLPKDPRQWTREHVAQWINLVTQ 53


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 101 PKRDVVKSQETT 66
           PKRD++ SQE T
Sbjct: 9   PKRDMLDSQEKT 20


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 8   IEFLIQNDDLHGQGQKAGR 64
           ++FL +N+D  G G+  GR
Sbjct: 81  VDFLGENNDDSGGGRGGGR 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,243
Number of Sequences: 336
Number of extensions: 2766
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)