Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30573
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   0.72 
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    27   2.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   3.8  
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   6.7  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    25   8.9  
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr...    25   8.9  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   8.9  
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    25   8.9  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -2

Query: 455 SITAVRFQRSHSDNAVLIF-FFPQILDDFRSLFPCILQYVVQVFHLEGYVFHEV 297
           ++TA  F+ S  + A +I  FF   L+DF S+FP  L+  V+     G++ + V
Sbjct: 301 NVTATPFEVSDMNWAYIIASFFRTCLNDFVSVFPEWLKGFVEEKRTIGFIIYSV 354


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 252 EPMETEFVNEVAI-HGDFVKDVAFQVENLDYILEYARKQGAKVVKDLWEEKDQYGVVRMA 428
           E ++   V  V +  GD + D+ F+ E L  IL Y   Q + + KDL     +  ++  A
Sbjct: 288 EALDVSQVRWVVLDEGDRLMDMGFE-ETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSA 346

Query: 429 TLK 437
           T+K
Sbjct: 347 TMK 349


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 299 LRERRSLPSGKLGLHIGVCKETGSESRQGSVGRKRSIRR 415
           LRER +  SG +G+H+      G       +GRK ++RR
Sbjct: 428 LRERMAKMSGGIGMHV-----FGLPGLAAPIGRKNTLRR 461


>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 246 QYEPMETEFVNEVAIHGDFVKDVAFQVENLDYIL 347
           +YE  E E ++E+  + D+++     +  LDY L
Sbjct: 3   EYEDFEMEDLSELVSYMDYLETQRLTISQLDYSL 36


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 141 SSRSNWPLVWRSKPKT*RGQKPRNDHRPAFCPCPCKS 31
           SSR+  P+    KP   R   P   + P  C  PCK+
Sbjct: 26  SSRTIVPIASIYKPLNERPDLPPVLYEPVTCKAPCKA 62


>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 169

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 243 AQYEPMETEFVNEVAIHGDFVKDVAFQVENLDYILE 350
           A+Y+ MET  V  VA   D + D+   ++++ ++ E
Sbjct: 37  AKYKFMETSVVRRVASLDDKIPDIRKTLQSVQFLKE 72


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 86   PRHVLGFERQTSGQLLRDEVW--LRAIGLQRSGDGF 187
            P + +GF+  T    LR  +W  LR+  L R+  GF
Sbjct: 961  PFYCIGFKNATPEYTLRTRIWASLRSQTLYRTVSGF 996


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
 Frame = +3

Query: 195 ISSHAVRMNKIIFVFQAQYE----PMET-EFVNEVAIHGDFVKDVAFQVENLDYILEYAR 359
           +S +A++  +I  V  AQY+    P    EF   +  H   ++++AF VEN+  ++E  R
Sbjct: 199 LSEYAIKSKEIQNVL-AQYDSNLCPASIDEFYMNLTSHLR-LQELAFTVENITMVVEKIR 256

Query: 360 KQ 365
           KQ
Sbjct: 257 KQ 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,176
Number of Sequences: 5004
Number of extensions: 48075
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)