Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30573
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g06570.1 68414.m00696 4-hydroxyphenylpyruvate dioxygenase (HP... 40 0.001
At4g24460.1 68417.m03506 expressed protein 28 4.3
At2g22740.2 68415.m02696 SET domain-containing protein (SUVH6) i... 28 4.3
At2g22740.1 68415.m02695 SET domain-containing protein (SUVH6) i... 28 4.3
At4g35790.3 68417.m05086 phospholipase D delta / PLD delta (PLDD... 27 5.7
At4g35790.2 68417.m05085 phospholipase D delta / PLD delta (PLDD... 27 5.7
At4g35790.1 68417.m05084 phospholipase D delta / PLD delta (PLDD... 27 5.7
At3g05190.1 68416.m00566 aminotransferase class IV family protei... 27 5.7
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr... 27 7.5
At2g21950.1 68415.m02608 SKP1 interacting partner 6 (SKIP6) iden... 27 7.5
At5g65200.1 68418.m08200 armadillo/beta-catenin repeat family pr... 27 9.9
At5g35400.1 68418.m04207 tRNA pseudouridine synthase family prot... 27 9.9
At1g63690.2 68414.m07208 protease-associated (PA) domain-contain... 27 9.9
At1g63690.1 68414.m07207 protease-associated (PA) domain-contain... 27 9.9
At1g30110.1 68414.m03680 diadenosine 5',5'''-P1,P4-tetraphosphat... 27 9.9
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi... 27 9.9
>At1g06570.1 68414.m00696 4-hydroxyphenylpyruvate dioxygenase (HPD)
identical to 4-hydroxyphenylpyruvate dioxygenase (HPD)
SP:P93836 [Arabidopsis thaliana (Mouse-ear cress)]
Length = 473
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/74 (28%), Positives = 32/74 (43%)
Frame = +3
Query: 36 YTDKGRKPDDGRFLAFDHVTFWVSNAKQAASYYVTRFGFEPLAYSGLETGSRQISSHAVR 215
+ K K D + F H+ FW +A A + G A S L TG+ +S+ +
Sbjct: 60 FVRKNPKSDKFKVKRFHHIEFWCGDATNVARRFSWGLGMRFSAKSDLSTGNMVHASYLLT 119
Query: 216 MNKIIFVFQAQYEP 257
+ F+F A Y P
Sbjct: 120 SGDLRFLFTAPYSP 133
>At4g24460.1 68417.m03506 expressed protein
Length = 431
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -3
Query: 394 SHRSLTTFAPCFLAYSNM*SKF-STWKATSFTKSP 293
S+RS T + CFL S++ S+F ST K TS + P
Sbjct: 40 SYRSTTMMSMCFLRRSDLRSRFLSTPKTTSPMRRP 74
>At2g22740.2 68415.m02696 SET domain-containing protein (SUVH6)
identical to SUVH6 [Arabidopsis thaliana] GI:13517753;
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain
Length = 790
Score = 27.9 bits (59), Expect = 4.3
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +2
Query: 227 NLRVSSAI*ANGNRIRKRSRNSW*LRERRSLPSGKLGLHIGVCKETGSESRQGSVGRKRS 406
+L+V S G+R +K +N + R+R SL S + +GV +GS S S + +
Sbjct: 217 SLKVVSREFGEGSRKKKSKKNLY-WRDRESLDSPEQLRILGVGTSSGSSSGDSSRNKVKE 275
Query: 407 IRRCQNGYVENVRQ 448
R +G + Q
Sbjct: 276 TLRLFHGVCRKILQ 289
>At2g22740.1 68415.m02695 SET domain-containing protein (SUVH6)
identical to SUVH6 [Arabidopsis thaliana] GI:13517753;
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain
Length = 790
Score = 27.9 bits (59), Expect = 4.3
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +2
Query: 227 NLRVSSAI*ANGNRIRKRSRNSW*LRERRSLPSGKLGLHIGVCKETGSESRQGSVGRKRS 406
+L+V S G+R +K +N + R+R SL S + +GV +GS S S + +
Sbjct: 217 SLKVVSREFGEGSRKKKSKKNLY-WRDRESLDSPEQLRILGVGTSSGSSSGDSSRNKVKE 275
Query: 407 IRRCQNGYVENVRQ 448
R +G + Q
Sbjct: 276 TLRLFHGVCRKILQ 289
>At4g35790.3 68417.m05086 phospholipase D delta / PLD delta
(PLDDELTA) identical to phospholipase D delta SP: Q9C5Y0
from [Arabidopsis thaliana]; supporting cDNA
gi|11761141|dbj|AB031047.1|
Length = 693
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +3
Query: 333 LDYILEYARKQGAKVVKDLWEEK---DQYGVVRMATLKTYGSNTHTLVDRSKYTGPFLPG 503
L +L+Y ++G +V+ +W++K D++G+ + T+ T S P
Sbjct: 282 LGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGTHDEETRKFFKHSSVICVLSPR 341
Query: 504 Y 506
Y
Sbjct: 342 Y 342
>At4g35790.2 68417.m05085 phospholipase D delta / PLD delta
(PLDDELTA) identical to phospholipase D delta SP: Q9C5Y0
from [Arabidopsis thaliana]; supporting cDNA
gi|11761141|dbj|AB031047.1|
Length = 857
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +3
Query: 333 LDYILEYARKQGAKVVKDLWEEK---DQYGVVRMATLKTYGSNTHTLVDRSKYTGPFLPG 503
L +L+Y ++G +V+ +W++K D++G+ + T+ T S P
Sbjct: 282 LGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGTHDEETRKFFKHSSVICVLSPR 341
Query: 504 Y 506
Y
Sbjct: 342 Y 342
>At4g35790.1 68417.m05084 phospholipase D delta / PLD delta
(PLDDELTA) identical to phospholipase D delta SP: Q9C5Y0
from [Arabidopsis thaliana]; supporting cDNA
gi|11761141|dbj|AB031047.1|
Length = 868
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +3
Query: 333 LDYILEYARKQGAKVVKDLWEEK---DQYGVVRMATLKTYGSNTHTLVDRSKYTGPFLPG 503
L +L+Y ++G +V+ +W++K D++G+ + T+ T S P
Sbjct: 282 LGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGTHDEETRKFFKHSSVICVLSPR 341
Query: 504 Y 506
Y
Sbjct: 342 Y 342
>At3g05190.1 68416.m00566 aminotransferase class IV family protein
contains Pfam profile: PF01063 aminotransferase class IV
Length = 555
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 258 METEFVNEVAIHGDFVKDVAFQVENLDYILEYARKQGAKVVKDL 389
++TE V+E ++ F+K F D +L G KVVKD+
Sbjct: 28 LDTEVVDE-PLYASFLKATGFDRPYRDEVLSKMECNGEKVVKDV 70
>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 284
Score = 27.1 bits (57), Expect = 7.5
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +2
Query: 260 GNRIRK-RSRNSW*LRERRSLPSGKLGLHIGVCKETGSESRQGSVGRKRSIRRCQNGYVE 436
GNR R+ R++ S R ++ S ++ + + K GS S + ++ R +RC+
Sbjct: 189 GNRSREPRAKVSRESRSEKAEDSNEVATQLEL-KTPGSTSDKDTLQRPEKTKRCKRNNNN 247
Query: 437 NVRQ*YSHSSR 469
N + SHSS+
Sbjct: 248 NSIEESSHSSK 258
>At2g21950.1 68415.m02608 SKP1 interacting partner 6 (SKIP6)
identical to SKP1 interacting partner 6 GI:10716957 from
[Arabidopsis thaliana]
Length = 372
Score = 27.1 bits (57), Expect = 7.5
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Frame = +3
Query: 99 WVSNAKQAASYYVTRFGFEPLAYSGLETGSRQISSHAVRMNKIIFVFQAQ---YEPMETE 269
W + A + + +EP+A G+E + + + AV K+ + YEP E +
Sbjct: 186 WARSINWAEMFDIKTQTWEPVASPGMEVREKWMHASAVMEGKVYAMADRNGVVYEPKEKK 245
Query: 270 F-VNEVAIHGDFVKDVAFQVENLDYILEYARK-QGAKVVKDLWEE 398
+ + E + + + A +EN+ Y +Y K +G + +W E
Sbjct: 246 WEMPEKRLDLGW-RGRACVIENILYCYDYLGKIRGYDPKERIWRE 289
>At5g65200.1 68418.m08200 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 556
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 135 VTRFGFEPLAYSGLETGSRQISSHA 209
+ R GF P+ L++GSR+ HA
Sbjct: 303 IVRLGFVPILIDVLKSGSREAQEHA 327
>At5g35400.1 68418.m04207 tRNA pseudouridine synthase family protein
weak similarity to SP|P07649 tRNA pseudouridine
synthase A (EC 4.2.1.70) (Uracil hydrolyase)
{Escherichia coli}; contains Pfam profile PF01416: tRNA
pseudouridine synthase
Length = 420
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 54 KPDDGRFLAFDHVTFWVSNAKQAASYYVTRFGFEPLA 164
KP +GR L VS Q S+Y R EP+A
Sbjct: 143 KPLEGRVLVAGRTDKGVSALNQVCSFYTWRKDIEPIA 179
>At1g63690.2 68414.m07208 protease-associated (PA) domain-containing
protein contains protease associated (PA) domain,
Pfam:PF02225
Length = 540
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -2
Query: 341 VVQVFHLEGYVFHEVTMNCDFVYEFGFHWLILRLKHEDYLI 219
V+Q+ H+ V ++C F+Y+ + ++ +L HE +I
Sbjct: 362 VLQIVHVPNLKVGTVLLSCAFLYDIFWVFVSKKLFHESVMI 402
>At1g63690.1 68414.m07207 protease-associated (PA) domain-containing
protein contains protease associated (PA) domain,
Pfam:PF02225
Length = 540
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -2
Query: 341 VVQVFHLEGYVFHEVTMNCDFVYEFGFHWLILRLKHEDYLI 219
V+Q+ H+ V ++C F+Y+ + ++ +L HE +I
Sbjct: 362 VLQIVHVPNLKVGTVLLSCAFLYDIFWVFVSKKLFHESVMI 402
>At1g30110.1 68414.m03680 diadenosine 5',5'''-P1,P4-tetraphosphate
hydrolase, putative similar to diadenosine
5',5'''-P1,P4-tetraphosphate hydrolase GI:1888557 from
[Lupinus angustifolius], [Hordeum vulgare subsp.
vulgare] GI:2564253; contains Pfam profile PF00293:
NUDIX domain
Length = 175
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = -2
Query: 257 WLILRLKHEDYLIHSDGMRRNLSRTRLQTAVSQWLEAKPRHVVTGRLFGVRNPKRDVVKS 78
W ++RL++++ D NL+ + ++W AKP VV + R +V+K+
Sbjct: 102 WYLVRLRNDE-----DEKEINLANNEADSEFAEWKWAKPEEVVEQAVDYKRPTYEEVIKT 156
>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
protein ESTs gb|F20110 and gb|F20109 come from this gene;
contains Pfam profile PF00515: TPR Domain
Length = 1558
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 92 HVLGFERQTSGQLLRDEVWLRAIGLQRSGDG 184
H L +RQT + DE W A RSG+G
Sbjct: 1135 HRLNVDRQTVEESTLDEGWQEAYSKGRSGNG 1165
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,865,528
Number of Sequences: 28952
Number of extensions: 249349
Number of successful extensions: 698
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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