Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30570
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25728| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_58170| Best HMM Match : Spindle_assoc (HMM E-Value=2.3)             27   9.2  
SB_43952| Best HMM Match : Spindle_assoc (HMM E-Value=2.3)             27   9.2  

>SB_25728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 222 LSTLVSKF*TWK*ISPVSIFLWNVFI-RFYYERTRSLY*FLV 344
           LS L++ F +WK  +P +  L  VF+ +  YER R++  +L+
Sbjct: 131 LSKLITDFVSWKEATPYAAILSGVFLFQCKYERNRAVLNYLM 172


>SB_58170| Best HMM Match : Spindle_assoc (HMM E-Value=2.3)
          Length = 310

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 162 NHSSYSKLYDALTNSIKWCTKLIHSIE*ARKCLLD 58
           N +   KL  +L+N  K C+K + SIE A++  LD
Sbjct: 49  NKTETLKLDRSLSNYDKQCSKAVKSIEFAQRSFLD 83


>SB_43952| Best HMM Match : Spindle_assoc (HMM E-Value=2.3)
          Length = 310

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 162 NHSSYSKLYDALTNSIKWCTKLIHSIE*ARKCLLD 58
           N +   KL  +L+N  K C+K + SIE A++  LD
Sbjct: 49  NKTETLKLDRSLSNYDKQCSKAVKSIEFAQRSFLD 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,562,101
Number of Sequences: 59808
Number of extensions: 183862
Number of successful extensions: 302
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)