Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30565
(511 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55770.1 68416.m06197 LIM domain-containing protein similar t... 56 1e-08
At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 56 2e-08
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 52 3e-07
At3g61230.1 68416.m06852 LIM domain-containing protein similar t... 51 5e-07
At1g10200.1 68414.m01150 transcription factor LIM, putative stro... 51 5e-07
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 49 2e-06
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 33 0.11
At5g66610.1 68418.m08396 LIM domain-containing protein contains ... 32 0.20
At5g66630.1 68418.m08398 LIM domain-containing protein contains ... 31 0.34
At1g16680.1 68414.m01997 DNAJ heat shock N-terminal domain-conta... 31 0.60
At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger) fa... 30 0.79
At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger) fa... 30 0.79
At4g36860.1 68417.m05226 LIM domain-containing protein low simil... 29 2.4
At5g66620.1 68418.m08397 LIM domain-containing protein contains ... 28 3.2
At1g68330.1 68414.m07805 expressed protein 28 4.2
At3g54360.1 68416.m06008 expressed protein DNA-binding Mel-18 pr... 27 7.3
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 27 9.7
At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger) fa... 27 9.7
>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 199
Score = 56.4 bits (130), Expect = 1e-08
Identities = 25/51 (49%), Positives = 31/51 (60%)
Frame = +2
Query: 98 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCK 250
KC C K+VYA E A G+ +HK CFKC C+ L ++ S EG LYCK
Sbjct: 9 KCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCK 59
Score = 44.8 bits (101), Expect = 3e-05
Identities = 22/58 (37%), Positives = 29/58 (50%)
Frame = +2
Query: 98 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKF 271
KC C K+VY E+ +HK CFKC + +N + EG LYCK A+ F
Sbjct: 107 KCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLF 164
>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 200
Score = 55.6 bits (128), Expect = 2e-08
Identities = 23/51 (45%), Positives = 30/51 (58%)
Frame = +2
Query: 98 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCK 250
KC C K+VY E A G+ +HK CFKC C+ L +N S EG +YC+
Sbjct: 9 KCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCR 59
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/58 (37%), Positives = 29/58 (50%)
Frame = +2
Query: 98 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKF 271
KC C K+VY E+ +HK CFKC + +N + EG LYCK A+ F
Sbjct: 108 KCATCTKTVYPIEKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLF 165
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 51.6 bits (118), Expect = 3e-07
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +2
Query: 98 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCK 250
KC C K+VY + G+ +HK CF+C C+ L +N S +G LYCK
Sbjct: 9 KCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCK 59
Score = 36.7 bits (81), Expect = 0.009
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 98 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCK 250
KC C K+VY E+ G +HK CF+C L ++ + + LYC+
Sbjct: 103 KCAACEKTVYPLEKIQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCR 153
>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
SP|P29675 Pollen specific protein SF3 {Helianthus
annuus}; contains Pfam profile PF00412: LIM domain
Length = 213
Score = 50.8 bits (116), Expect = 5e-07
Identities = 21/51 (41%), Positives = 27/51 (52%)
Frame = +2
Query: 98 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCK 250
KC C K+VY + G+ +HK CF+C C L N S +G LYCK
Sbjct: 10 KCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCK 60
Score = 46.8 bits (106), Expect = 8e-06
Identities = 26/86 (30%), Positives = 42/86 (48%)
Frame = +2
Query: 14 SGXLDSRSDSTNRIS*ASTMPFKPADNPKCPKCGKSVYAAEERVAGGLKWHKMCFKCGLC 193
+G + +D+T + S+ F KC C K+VY E+ G +HK CF+C
Sbjct: 80 AGKTEKSNDATKAPNRLSS--FFSGTQDKCAACKKTVYPLEKMTMEGESYHKTCFRCAHS 137
Query: 194 QKLLDSTNCSEHEGELYCKVCHARKF 271
L ++ + +G LYCKV ++ F
Sbjct: 138 GCPLTHSSYAALDGVLYCKVHFSQLF 163
>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
similarity to transcription factor Ntlim1 [Nicotiana
tabacum] GI:5689136, LIM domain protein WLIM-1
[Helianthus annuus] GI:5070280; contains Pfam profile
PF00412: LIM domain
Length = 190
Score = 50.8 bits (116), Expect = 5e-07
Identities = 23/54 (42%), Positives = 29/54 (53%)
Frame = +2
Query: 98 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCH 259
KC C K+VY E+ G +HK CFKC + +N HEG+LYCK H
Sbjct: 109 KCVGCDKTVYPIEKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHH 162
Score = 50.0 bits (114), Expect = 9e-07
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +2
Query: 98 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCK 250
KC C K+VY ++ A +HK CF+C C+ L +N + EG LYC+
Sbjct: 9 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCR 59
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 48.8 bits (111), Expect = 2e-06
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +2
Query: 98 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCK 250
KC C K+VY + G +HK CF+C C+ L +N S +G LYCK
Sbjct: 9 KCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCK 59
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +2
Query: 98 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKV 253
KC C K+VY E+ G +HK CF+C L ++ + G LYCKV
Sbjct: 105 KCATCKKTVYPLEKVTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKV 156
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 33.1 bits (72), Expect = 0.11
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +2
Query: 92 NPKCPKCGKSVYAAEERV---AGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCH 259
NP KC A E+ + A G WH CF C C++ + S+ G +Y K C+
Sbjct: 1234 NPPLSKCKDCKSAIEDGISINAYGSVWHPQCFCCLRCREPIAMNEISDLRG-MYHKPCY 1291
>At5g66610.1 68418.m08396 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 529
Score = 32.3 bits (70), Expect = 0.20
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Frame = +2
Query: 101 CPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHE--GELYC 247
C C ++ A G+ WH CF C C K + EH E YC
Sbjct: 201 CDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPIAMHEYKEHPFWKEKYC 251
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
similarity to Pfam profile PF00412: LIM domain
Length = 702
Score = 31.5 bits (68), Expect = 0.34
Identities = 24/100 (24%), Positives = 32/100 (32%), Gaps = 11/100 (11%)
Frame = +2
Query: 2 TVHASGXLDSRSDSTNRIS*ASTMPFKPADNPKCPKCGKSVYAAEERVAGGLKWHKMCFK 181
T H +D + + I +P C C +V E G+ WH CF
Sbjct: 314 TFHLKPLIDDEVECRDEIEENEKLPEVNPPLSMCGGCNSAVKHEESVNILGVLWHPGCFC 373
Query: 182 CGLCQKLLDSTNCSEHEG-----------ELYCKVCHARK 268
C C K + H E YC VC +K
Sbjct: 374 CRSCDKPIAIHELENHVSNSRGKFHKSCYERYCYVCKEKK 413
>At1g16680.1 68414.m01997 DNAJ heat shock N-terminal
domain-containing protein / S-locus protein, putative
similar to S-locus protein 5 GI:6069485 from [Brassica
rapa]; contains Pfam profile PF00226 DnaJ domain
Length = 496
Score = 30.7 bits (66), Expect = 0.60
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +2
Query: 101 CPKCGKS-VYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCH 259
C KCG S ++ R +W C +CG + D EH+G L + H
Sbjct: 335 CTKCGNSHIWVCTNRSKAKARW---CQECGQYHQAKDGDGWVEHKGTLVFEKAH 385
>At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 255
Score = 30.3 bits (65), Expect = 0.79
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = +2
Query: 170 MCFKCGLCQKL---LDSTNCSEHEGELYCKVC 256
MC KC L Q + +T+C G+ +CK+C
Sbjct: 62 MCMKCLLIQPIGANCSNTSCKSSMGKYFCKIC 93
>At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 195
Score = 30.3 bits (65), Expect = 0.79
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = +2
Query: 170 MCFKCGLCQKL---LDSTNCSEHEGELYCKVC 256
MC KC + Q + + +CS G+ YCK+C
Sbjct: 2 MCMKCMIIQPVGASCSNISCSSSMGKYYCKIC 33
>At4g36860.1 68417.m05226 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 351
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 149 GGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCH 259
GG+ WH CF C C K + S Y K+C+
Sbjct: 2 GGV-WHPECFCCNACDKPIIDYEFSMSGNRPYHKLCY 37
Score = 26.6 bits (56), Expect = 9.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 101 CPKCGKSVYAAEERVAGGLKWHKMCFK 181
C C K + E ++G +HK+C+K
Sbjct: 12 CNACDKPIIDYEFSMSGNRPYHKLCYK 38
>At5g66620.1 68418.m08397 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 644
Score = 28.3 bits (60), Expect = 3.2
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 14/73 (19%)
Frame = +2
Query: 92 NPKCPKCGKSVYAAEERVAG---GLKWHKMCFKCGLCQKLLDSTNCSEHEG--------- 235
NP CG +A E + G+ WH CF C C K + + H
Sbjct: 280 NPPPSLCGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPIAIHDIENHVSNSRGKFHKS 339
Query: 236 --ELYCKVCHARK 268
E YC VC +K
Sbjct: 340 CYERYCYVCKEKK 352
>At1g68330.1 68414.m07805 expressed protein
Length = 268
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 267 LRAWHTLQYSSPSCSEQLVESSNFWHRPHLKHILCHLRPPATRSSA 130
+R++H L S+ + + L H PH H L +PP RSS+
Sbjct: 159 IRSFHFLSRSNSTPNPNLDLLPKETHHPHKTHNLPKHKPPLRRSSS 204
>At3g54360.1 68416.m06008 expressed protein DNA-binding Mel-18
protein, Homo sapiens, PIR:JN0717
Length = 405
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 176 FKCGLCQKLL-DSTNCSEHEGELYCKVCHAR 265
F C LCQ LL +S+ C ++CKVC R
Sbjct: 106 FSCMLCQALLYESSRCVPCT-HVFCKVCLTR 135
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 131 AEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKF 271
A E+ A G K ++ +C +C +D E L+CK C +F
Sbjct: 1544 AREKSALGEKPDEIELECPICLSEVDDGYSLEGCSHLFCKACLLEQF 1590
>At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 660
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +2
Query: 176 FKCGLCQKLLD---STNCSEHEGELYCKVCHARKF 271
FKC +CQK++ +T C+ + +CK C KF
Sbjct: 526 FKCQICQKVMTNPVTTPCAHN----FCKACLESKF 556
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,204,356
Number of Sequences: 28952
Number of extensions: 186434
Number of successful extensions: 554
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -