Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30564
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   3.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   5.7  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   5.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.7  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              21   10.0 
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   10.0 

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 123 DEERMDQLTNQLKEARLLAEDADGKSD 203
           D  R+D + +  ++ARLL E +  ++D
Sbjct: 218 DGFRIDAINHMFEDARLLDEPSANRTD 244


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
 Frame = -3

Query: 88  RLFSSA-DCWASSSFCWAV 35
           R F+SA D W+    CW V
Sbjct: 813 RKFTSASDVWSMGIVCWEV 831


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -3

Query: 406 LPVRVFSCFLNSSTRWLAFS--SDT 338
           LPV +     + STRW+AF+  SDT
Sbjct: 106 LPVAISFFNDDLSTRWIAFNCLSDT 130


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -3

Query: 406 LPVRVFSCFLNSSTRWLAFS--SDT 338
           LPV +     + STRW+AF+  SDT
Sbjct: 106 LPVAISFFNDDLSTRWIAFNCLSDT 130


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -3

Query: 406 LPVRVFSCFLNSSTRWLAFS--SDT 338
           LPV +     + STRW+AF+  SDT
Sbjct: 106 LPVAISFFNDDLSTRWIAFNCLSDT 130


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = -2

Query: 263 DTVFGDFEFVFNEGQFSRNLVGFSVSVLGEKTGLFQLVGE 144
           + +   F  V   G F  N+V    S+  ++  + +LV E
Sbjct: 64  ECILKQFNIVDESGNFKENIVQELTSIYLDENVIKKLVAE 103


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = -2

Query: 263 DTVFGDFEFVFNEGQFSRNLVGFSVSVLGEKTGLFQLVGE 144
           + +   F  V   G F  N+V    S+  ++  + +LV E
Sbjct: 64  ECILKQFNIVDESGNFKENIVQELTSIYLDENVIKKLVAE 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,425
Number of Sequences: 438
Number of extensions: 1863
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)