Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30563
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)                   31   0.56 
SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)                 30   1.3  
SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.7  
SB_27051| Best HMM Match : DUF827 (HMM E-Value=1.8)                    29   3.0  
SB_12804| Best HMM Match : TF_Otx (HMM E-Value=7)                      29   3.0  
SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)                   29   3.0  
SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)           28   4.0  
SB_933| Best HMM Match : ExoD (HMM E-Value=6)                          28   5.3  
SB_45939| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00051)         27   6.9  
SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44)             27   6.9  
SB_36923| Best HMM Match : FlaC_arch (HMM E-Value=0.34)                27   6.9  
SB_1743| Best HMM Match : DUF563 (HMM E-Value=3.7)                     27   6.9  
SB_16514| Best HMM Match : Paxillin (HMM E-Value=3.7)                  27   9.2  
SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  

>SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)
          Length = 415

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 248 GSIFPDDALSVSPASNHHL-IHRIRFLRACRERDVGIIRCSDFEL 117
           GSIF D    VS   NH L + R + L  C+ER++G     D EL
Sbjct: 303 GSIFHDKTFIVSDLRNHVLRVFRQKGLTICKERNIGQRGGKDGEL 347


>SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)
          Length = 878

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 171 QESDPMYEVMIGGWGNAKSVIRKN-RTKPDKVEIESPGILNGG 296
           Q+ D MYEV+I       + +RK+ R+  D  E E PGI+ GG
Sbjct: 766 QQQDQMYEVLI------HNALRKSFRSDEDDDENEEPGIIRGG 802


>SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +3

Query: 165 GPQESDPMYEVMIGGWGNAKSVIRKNRT-KPDKVEIESPGILNGGEY 302
           GP +   +    +G W    S  R  +T  P KV +  PGI NG  Y
Sbjct: 84  GPTQDCDVNSGEVGPWKEVPSCSRVGQTGDPSKVRVYGPGIENGLRY 130


>SB_27051| Best HMM Match : DUF827 (HMM E-Value=1.8)
          Length = 283

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
 Frame = +3

Query: 105 SGSVQFKVRAANDAHIALTTGPQESDPMYEVMI-------GGWGNAKSVIRKNRTKPDKV 263
           SGSV + V  A  +H  L    + + P+Y + +          G    V+R    +P+K 
Sbjct: 84  SGSVNYFVAPAESSHSQLVLIEELNQPIYSLTLKIIICLSETTGTLPLVLRNALPRPEKY 143

Query: 264 EIESPGILNG 293
              SPG L G
Sbjct: 144 PENSPGTLTG 153


>SB_12804| Best HMM Match : TF_Otx (HMM E-Value=7)
          Length = 245

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +1

Query: 313 GFVGIAALSPLDARVKLFHSYPGLIPNLSQFTTSESAQAGVPQAPGKSKMERNSI 477
           G  G   L P+        S  G +P+L Q     S  + +P +PG+  + R ++
Sbjct: 93  GVPGAPTLVPIQRPAPSVPSPTGRVPHLDQIPHVPSGPSSLPSSPGEPLISRGTV 147


>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
          Length = 2153

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 394 LSQFTTSESAQAGVPQAPGK-SKMERNS 474
           L +FT + +++ G+P  PGK S++ +NS
Sbjct: 448 LQEFTQTHASKGGIPSTPGKTSEVSKNS 475


>SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)
          Length = 225

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 261 VEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEPFPV-YYV 413
           + I + GI +  +   FWV + S  +  G     I    W+DP+P  V YY+
Sbjct: 1   LNIATSGITSAEKRMVFWVDFRSANLVLGSGATVIA--QWTDPDPLEVGYYI 50


>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
          Length = 555

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 253 PIRLKLKAPEFLTEGNIVVFGFVG-IAALSPLDARVKLFHSYPG 381
           P  ++ K P  L +G I+  GF+G ++AL      ++LF    G
Sbjct: 100 PYVIRPKGPRLLRQGTIMKAGFIGLVSALGVYACNLELFRRCAG 143


>SB_45939| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00051)
          Length = 575

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = +3

Query: 192 EVMIGGWGNAKSVIRKNRTKPDKVEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPF 371
           +  + G  +AKS+   +  +P+K +IES   LN    +       + +I AG + +A P 
Sbjct: 247 QCQLAGTRSAKSIYFGSYYRPNKSDIESLDELNSSLLKMGTTLHKNNVILAG-DFDA-PD 304

Query: 372 ISWSDPE 392
           I W +PE
Sbjct: 305 IDWVNPE 311


>SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44)
          Length = 950

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 213 GNAKSVIRKNRTKPDKVEIESPGILNGGEYRGFWVR 320
           GNA  VI      P+ +E E PG L   + R  W R
Sbjct: 784 GNAADVIDGAGAPPEGLEQEEPGPLRTAQSREAWTR 819


>SB_36923| Best HMM Match : FlaC_arch (HMM E-Value=0.34)
          Length = 240

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 324 DSGIISAGREGEAIPFISWSDPEPFPVYYVGVCTG 428
           D G +  G E   I F+ WS  + F      VCTG
Sbjct: 200 DKGNVKMGNELSDISFVLWSVEQEFASNAGAVCTG 234


>SB_1743| Best HMM Match : DUF563 (HMM E-Value=3.7)
          Length = 249

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 245 SIFPDDALSVSPASNHHLIHRIRFLRAC 162
           S+ P+ A+S++  S HH   R  FLR C
Sbjct: 154 SLHPEVAMSLATYSLHHFTQRRFFLRRC 181


>SB_16514| Best HMM Match : Paxillin (HMM E-Value=3.7)
          Length = 311

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 198 MIGGWGNAKSVIRKNRTKPDKVEIESPGILNGGE 299
           ++GG GN  ++ R + T P+ V  E P  L  G+
Sbjct: 125 LMGGNGNTGALTRTSNTNPNMVFEEKPAYLADGD 158


>SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1371

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 477  YRIPLHLRFSRSLWHP 430
            Y +P  LRF R+LW P
Sbjct: 1113 YALPFQLRFGRTLWKP 1128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,382,628
Number of Sequences: 59808
Number of extensions: 373087
Number of successful extensions: 1096
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)